Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1083 ATGTTGACCGGACGAGAGAGCTTGATCCGATTGATCGGGAAACGGAGGAGGTTCCTCCCCAACCGTCAATCTCTTCTCTCAGCTCCAATCGAGAGTACCTTGTCTCTCAGCGGAGATGAAAATGGCGGAATGTTGGAGCGAACAGCGGGCGTTTCGGGTGAAACGACGTCGTCTAAGGTTGATTGGGTTCCTTGCCCTGTTTGTGGAAGCACTATTCGCGGTGAAGATTACATGATAAATTCTCATCTAGATGCATGTCTAGCTAGAGGAACCAAGCGGAAGTTGACCCAACGCACTCTTCTTCAATTAAACTTCTGCTCAAGATCAATGGATAAACTTGACTCCGGTGAATCAAAACACTTGGAGAACAGTGGGGTTCTGAAGGCTCCTGATAACAATCTTGTACGGAGTACCACTCCTAAATTTTCCTATTTGGGTGCATTTGAGGAAAATGATAATAAACAATTCAAATTGGACATTCACTTAGATTCTGTCATGCGTAATTACATAGATAGTTCAGCCGAAAATTTAATCAATGATGATACGACCAGCTATGATACCAGTTCCAATTCCCCTTCATTGCTCCCTAAAGATGAGATGCCTAAACATGATATAACTGTAGCTATGGACAACCTATCTGGGGTGACTCTTGAAACTTTTATTGTTGGTCGCAAGTTTAGTGATGAAGAGGAGTTAAATATTGGGGCTAGCATCTCTCTTCTGAGAGACCCTGATAATGTTAAGGACCCCAATGCTATTAAGGTTTCTTCAGGATGCAGTAAAGTGCTTGGTTTTCTTCCTCGAGAGTTAGCTCAATACCTCTCTCCCTTGATTGAGAAATACTGCATGAACTTTGAGGGATGTGTTACTTCTGTTCCAAAACATTCTCTTGATGTTGTTCCGATCCAGATTGTGAACCAAATAATGATACCATGTGGTGAAAAAGAATTTGATGATCTAGAGGCTTTCAGATTCTTATGGAAACGTGTTCTTCAGACTGTTGAGTCTGCAAAAACTTGTCCACCCAGCATTGCAAAATATCAGCGGAACTTTTGTTTTTTAATTCAGGAGGTTTTAGCAAGTAATCCACACCTCTTCACAGATGACGAGAAAATCTTCCTGGGATCTTTCACTTCACTCTCAGATGACTGTCAGAGAATTTTTGTTCGATTATATACAAGAAAAGGGCCATGGTTTCGGATGTGTAATATTTCCTACCCAGAAGTATTGGATTCTAAACAAGCTGTCAGGGGACTTTCTGATGCAGGTTATATTTGTTCCTCTCAGTCCATGATTGAGCCACATGATAATGGTGACATGAAGGAGGTTTTGAATTTGCTCACTGTTTCTGAGCTACGTGAAATTTCATCTGCACTTCAGCATTGCCATCATGGTACAAGAAAGCAGGATCTTATTGCCTCACTTCTTTCTTCTTATGAAGATGGATTATGCCCACTCCTACAAAGAGCAATTTTGAACAAAACAGGAACGTGTGTTCGGATTTCTTGTAAAGCCGAGTCCCTTGTCTGGCGTGCTCTGAGGCTCTTCTTCCTTAATGGAGAGCAGGATCTATCAGCATTTCTACTAGTTGATTTGGGAATAGTCAAGTATCCAACTTATAACTGCATAATTTCTGATCAGATCTTCCCAGGCTTGAATGATCTGCTTGCTTATGAAGAGGCCATTGAAGTTGCACAAATAATGGATGAAGCTCTTGATGACAAGAACAGTGGATTGGTGTTAAGATGCATTAGTATATCCAACTCCCGCCTATTCATTTCCTGTTCAAAGTCAACTCAATCTTCAGCTTCTGAATCAGCAGCTACATTCCTTTCATGCCTTTCAGCATCATGGGTATACTCGAAAGTGGTCTTGTTGGGAATTTCCTTTCTCGAGCGTGAGCGCAGGTACGATGATGCAGTACATTTACTGAAGCGTCTGCTGGATGGTTTTACTTGCGATGGAAGAAGAGGATATTGGACCTTGAGGTTGTCAGTTGATTTGGAGCATTTAGGACGTCTCAATGAGAGCCTTTCAGTTGCTGAAGATGGATTGCTAGATCCATGGGTTCGTGCTGGTTCAAGAATGGCACTACAAAGGCGAGTTCTTCGCTTGGGAAAACCACCAAGGCGCTGGAAAACTCCTTGCTATTCAGAGGCCATCAAGAGGAAGATCATTGAAGTTCATGTTCAAGGTAGACCTTTGAATTGTGAAACTGGGATGAAAAGCCGTTTTTATGGTGAAGATGGAGAGCAATGTGGAGTAGAGCAACTTGCTCTGCAGTATTATGCTGGGGAAGGAGGTGGTTGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACCATATTTGGCCTTCTGATGTGGGATATTATTTTTGCTGATGTACCAAATGTCTTCCACACCAGGTTTCAGACTGCTCCACTGGATTTGGAGACACAGAACTTTTATGTAATGAGGAAGAGTCTCATAGAATCCCACCTGGAGAAAATTAATAGCGACATGGCTGAGGAAATCCTCATCACTTCATGGGAATCGCATGTTGGAGTAGCTTGCAGAGGAGTCAATTGGGATCGTCATTCCTTGTCTGAGCTTCGTGCAGCTGTTACTTGCATTGGGGGCCCTTGTTTGGCCTCCATCTGCCGACATTTGGCTCAAGATTATCGGAGCTGGTCCAGTGGAATGCCAGACCTGTTGCTATGGCGCTTCCATGAAGATTACAAAGGTGAAGCCAAGCTAGTTGAAGTCAAAGGCCCCAGAGATCGACTCTCTGAACAGCAGCGAGCATGGCTGCTGCTTTTAATGGACTATGGCTTCAATGTAGAGGTGTGCAAAGTGGGCCCTGCATCCAAATGA 2856 43.31 MLTGRESLIRLIGKRRRFLPNRQSLLSAPIESTLSLSGDENGGMLERTAGVSGETTSSKVDWVPCPVCGSTIRGEDYMINSHLDACLARGTKRKLTQRTLLQLNFCSRSMDKLDSGESKHLENSGVLKAPDNNLVRSTTPKFSYLGAFEENDNKQFKLDIHLDSVMRNYIDSSAENLINDDTTSYDTSSNSPSLLPKDEMPKHDITVAMDNLSGVTLETFIVGRKFSDEEELNIGASISLLRDPDNVKDPNAIKVSSGCSKVLGFLPRELAQYLSPLIEKYCMNFEGCVTSVPKHSLDVVPIQIVNQIMIPCGEKEFDDLEAFRFLWKRVLQTVESAKTCPPSIAKYQRNFCFLIQEVLASNPHLFTDDEKIFLGSFTSLSDDCQRIFVRLYTRKGPWFRMCNISYPEVLDSKQAVRGLSDAGYICSSQSMIEPHDNGDMKEVLNLLTVSELREISSALQHCHHGTRKQDLIASLLSSYEDGLCPLLQRAILNKTGTCVRISCKAESLVWRALRLFFLNGEQDLSAFLLVDLGIVKYPTYNCIISDQIFPGLNDLLAYEEAIEVAQIMDEALDDKNSGLVLRCISISNSRLFISCSKSTQSSASESAATFLSCLSASWVYSKVVLLGISFLERERRYDDAVHLLKRLLDGFTCDGRRGYWTLRLSVDLEHLGRLNESLSVAEDGLLDPWVRAGSRMALQRRVLRLGKPPRRWKTPCYSEAIKRKIIEVHVQGRPLNCETGMKSRFYGEDGEQCGVEQLALQYYAGEGGGWQGVHTESGIWLTIFGLLMWDIIFADVPNVFHTRFQTAPLDLETQNFYVMRKSLIESHLEKINSDMAEEILITSWESHVGVACRGVNWDRHSLSELRAAVTCIGGPCLASICRHLAQDYRSWSSGMPDLLLWRFHEDYKGEAKLVEVKGPRDRLSEQQRAWLLLLMDYGFNVEVCKVGPASK* 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19643899 19662114 + Vvi5g1083 Vvi5g1083 787225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1083 951 ProSiteProfiles Zinc finger UBZ4-type profile. 62 91 IPR006642 GO:0003677|GO:0006281
Vvi5g1083 951 Gene3D Classic Zinc Finger 58 89 - -
Vvi5g1083 951 PANTHER FANCONI-ASSOCIATED NUCLEASE 1 173 949 IPR033315 GO:0004518|GO:0036297
Vvi5g1083 951 MobiDBLite consensus disorder prediction 180 195 - -
Vvi5g1083 951 SMART HIRAN_2 214 308 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi5g1083 951 Pfam VRR-NUC domain 833 946 IPR014883 GO:0016788
Vvi5g1083 951 Gene3D - 208 317 - -
Vvi5g1083 951 MobiDBLite consensus disorder prediction 180 199 - -
Vvi5g1083 951 Pfam HIRAN domain 216 297 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi5g1083 951 SMART c2hc_5 62 87 IPR006642 GO:0003677|GO:0006281
Vvi5g1083 951 SMART VRR_NUC_a_2 843 948 IPR014883 GO:0016788
Vvi5g1083 951 Gene3D - 878 947 IPR011856 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1083 K15363 FAN1, MTMR15; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1] - vvi:100261742 1887.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .