Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1084 ATGATTTCAATTGCTTGGGGCAGGCGAACCCCATTGGGCCTCATTCCCACCCGCATATGGAAGCAAGCTCAAACAACTGACAAGTCACGCGCTGGTGCAGTTGCAAGGAAAACCAACAAGGGGTTCCAGAAACACCCCGTTTCCTTTTCCCCACATAGTTTCAAGCTTGACCTCAACCCCACAACCAGAAGGTTGTGTGTGTGTGCTGTAGATAATTGGGTTTTGGGGGCAGTTGAAGGATATTCTCTAAATAGCATGTCTTTGGAGCCGGCGGATGAATATGATTACATGGCTGAAGATGAGGATATGGCTGATTTTGTGGATGACATGAATGAGGATAACAATGAAAGAGGTGGTGCAGAAATGGGGGATGATGAGTATAATATGCTCACTAAGGTGACAGACACATCCTCTGCTCAAGCAAGGAGTGGAAAAGATATTCAGGGCATTCCTTGGAACAGACTGAATATAACAAGGGAAAACTATAGAGTGACTAGACTTGAACAGTACAAGAATTACGAAAATGTTCCGTCATCTGGAGATGCTGTGGATAAGGAATGCAAACAAATGGAGAAAGGTGGGAACTACTTTGAATTCTTCCATAATACAAGATTGGTTAAGCCTACAATCCTTCACTTTCAGCTCAGGAACTTGGTTTGGGCTACTTCAAAACATGATGTCTATCTCATGTCTAACTATTCTGTTATGCATTGGTCATCAATATCTTCAAATTTGTCAGAGCTCCTGAATTTTTCTGGACATGTGGCTCCTTCTGAGAAACATCCCGGGAGCATATTAGAAGGTTTCATGCAAACTCAGATAAGTACATTGGCTGTCAAGGATAATTTTCTAGTTGCTGGTGGCTTCCAAGGAGAACTTACTTGTAAGCGTTTGGATAAAGAGGGAGTAAGCTTCTGTACCCGAACCACTTATGATGACAATGCCATTACAAATGCTCTTGAGATATATGACAGTCCAAGGGGTGGAATCCATTTCATGGCATCTAACAACGATTGTGGTGTAAGAGAGTATGACATGGAGAGCTTTCAGCTTTTGAATCACTTCCGCTTCCCTTGGCCAGTGAATCATACATCAATAAGCCCAGACCGCAAGCTTATTACTGTTGTTGGAGATCACCTACATGGATTGCTGGTGGATTCCCATAATGGAAAGACTGTGAGCTCTGTGGTAGGTCATCTAGATTACTCTTTTGCTTCAGCTTGGCATCCAAACGGCAACATCTTTGCGACAGGGAACCAGGACAAAACATGCCGGGTGTGGGATGCAAGGAAAGTTGGAACCCCCATTGCAGTTCTCAAGGGAAACTTGGGTGCAGTTCGATCAATACGGTTCTCATCAGATGGGCAGTTCATGGTGGTGGCAGAACCTGCAGATTTTGTGCATGTGTATGACACAAAAGCGGACTACAAGATGCGGCAAGAGATAGACTTCTTTGGGGAGATATCAGGGGTGTCCCTCAGTCCAGATGACGAGGCACTCTATATAGGAATATGGGATCGGACCTATGCAAGCTTGCTACAATACAACAAAAGGCATAAATATGGATATCTGGATTGCTACCTGTAA 1587 44.05 MISIAWGRRTPLGLIPTRIWKQAQTTDKSRAGAVARKTNKGFQKHPVSFSPHSFKLDLNPTTRRLCVCAVDNWVLGAVEGYSLNSMSLEPADEYDYMAEDEDMADFVDDMNEDNNERGGAEMGDDEYNMLTKVTDTSSAQARSGKDIQGIPWNRLNITRENYRVTRLEQYKNYENVPSSGDAVDKECKQMEKGGNYFEFFHNTRLVKPTILHFQLRNLVWATSKHDVYLMSNYSVMHWSSISSNLSELLNFSGHVAPSEKHPGSILEGFMQTQISTLAVKDNFLVAGGFQGELTCKRLDKEGVSFCTRTTYDDNAITNALEIYDSPRGGIHFMASNNDCGVREYDMESFQLLNHFRFPWPVNHTSISPDRKLITVVGDHLHGLLVDSHNGKTVSSVVGHLDYSFASAWHPNGNIFATGNQDKTCRVWDARKVGTPIAVLKGNLGAVRSIRFSSDGQFMVVAEPADFVHVYDTKADYKMRQEIDFFGEISGVSLSPDDEALYIGIWDRTYASLLQYNKRHKYGYLDCYL* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19681837 19700399 + Vvi5g1084 Vvi5g1084 787226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1084 528 PANTHER GAMYB-BINDING PROTEIN 95 527 - -
Vvi5g1084 528 SUPERFAMILY WD40 repeat-like 277 508 IPR036322 GO:0005515
Vvi5g1084 528 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 95 527 - -
Vvi5g1084 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 428 - -
Vvi5g1084 528 Pfam Uncharacterised protein domain (DUF2415) 444 480 IPR019417 -
Vvi5g1084 528 SMART WD40_4 389 428 IPR001680 GO:0005515
Vvi5g1084 528 SMART WD40_4 432 471 IPR001680 GO:0005515
Vvi5g1084 528 Pfam WD domain, G-beta repeat 391 428 IPR001680 GO:0005515
Vvi5g1084 528 Gene3D - 317 524 IPR015943 GO:0005515
Vvi5g1084 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 428 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1084 - - - vri:117914579 920.998
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1084 . . Bda03g01080 . Bpe04g00995 . Bma04g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0895 Cone11ag0609 . . . . Blo02g00418 Blo07g00077 . . . . Bma02g00997 Bma06g01409 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91