Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1085 ATGGCCAACGAGGACGTCCCAATTCAAATCAACGACGATGTTTTAGGCCTCATCGTCTTCAAGTCAGGCCTCCATGACCCCTCTTCACGCCTGGACTCATGGAGCGAAGACGATGACTCCCCGTGTTCCTGGGAATTTGTACAGTGCAATCCTAGCACAGGCAGGGTCTCAGAGGTGTCCGTTGATGGTTTGGGGTTGTCAGGGAAGATTGGAAGAGGGCTTGAGAAGTTGCAGAACTTGAAGGTACTGTCCTTGTCGTTTAACAATTTTTCTGGTAGTATAAGTCCAGAGTTGGCCCTCATCACTGGCCTTGAAAGGCTTAATCTTAGTCACAACAGCCTTTCAGGCCGCATACCTTCTTCTCTATCAAACATGACTTCTATAAGGTTTCTCGATCTCTCCCATAATTCACTTGCAGGACCTATCCCTGATGAAATGTTTGAAAACTATTCATCGCTAAGATCCCTTTCTCTATCAATGAATTTCCTGGAAGGGCCAATTCCTAGTGCACTGCTGAGGTGCACAACTTTGAGTAACCTCAACCTCTCCAGCAACCAGTTTTCGGCTGGGGACTTCCCTCAGTGGATTGGTAGTATGAGCAGTGTGGAGTACGTTGATTTCTCGGGGAATGGCTTCACGGGAAGCCTCCCAGCATCAATGGGTAACCTGAAATCACTGCAGTTTCTGAGCTTATCTGATAACAGACTAACTGGAAGTATTCCAGGGTCACTGTTTTACTGTCCCAAGCTATCAGTGATCCGGTTGAGAGGTAATGGCTTCAGTGGAAGCATACCTGAGGGCCTGTTTGATCTAGGTCTGGATGAAGTAGACTTGTCGGGGAACGAGCTAGAAGGCCCGATCCCACCAGGTTCAAGCAGGCTCTTTGAATCTCTTCACTCCTTGGACTTGTCGAGGAACAAGCTTACAGGAAGCATCCCTGCAGAAATCGGTCTTTTCTCAAGCTTAAGATACTTGAATTTATCATGGAACAGTCTCCGTTCCAGGATGCCACCAGAACTGGGGTACTTTCAGAACCTGACTGTGCTAGATCTTCGGAACACTTTTTTATTCGGGTCGATCCCGGGTGACATATGCGACTCAGGGAGTCTGGGCATTCTGCAGCTGGATGGAAATTCCTTGACTGGACCCATCCCGGATGAGTTTGGAAACTGTTCATCTCTATACTTGCTGAGCATGTCCCATAATGAATTAAATGGTTCCATTCCCAAGTCCTTTGCAATGTTGAAGAAGCTGGAGATTCTGAGGCTAGAGTTCAATGAACTGAGCGGGGAGATACCAAGGGAGCTTGGCAGTTTGGAGAATCTTCTTGCTGTTAATGTTTCTTACAACAGACTGATTGGGAGGCTTCCAGTTGGGGGCATATTTCAAAGCTTGGATCAAAGTGCATTGCAGGGAAATTTGGGAATTTGTTCACCCTTGCTGAAGGGACCATGTAAGCTGAATGTATCAAAGCCGTTGGTCCTTGACCCTTACGACTTTGGCAAGCCCATTAATGGTCAGAACCGAAGAAATGAATCTACTACAACTCCTATGCGATTCAGGCATCACATGTTCCTCAGTGTTTCAGCAATTATAGCCATCACTGCTGCTGCCTTTATTCTGATCGGGGTGGTAAGCATGTGCTCAAGCTCATCGCGGTCTGGGAGTCCTCCGACCGGGAAGCTCATTCTTTTCGATTCAAGGGCATCCCAGGATTGGATCGCCAATCCTGAAAACCTTCTCAACAAAGCCGCTGAGATCGGCGGTGGAGTTTTTGGAACTGTATACAAGGTTTCTTTAGGAGGGGGGGCGAGAATGGTAGCCATAAAAAAGCTTGTAACTTCGAATATAATCCAGTATCCAGAAGACTTCGACAGGGAAGTTCGGATCCTTGGGAAAGCTAGGCACCAGAACCTGATATCCCTGAAAGGATACTACTGGACTCCTCAGCTGCAGCTCCTGGTTACAGATTATGCGCCTAATGGGAGCTTACAGGCGAGACTCCATGAAAGGCCTCCAACTACACCACCTCTTTCCTGGCCAAATCGGTTCAGAATAATCCTAGGGACTGCGAAGGGGCTTGCCCACTTGCACCATTCTTTCCGGCCACCCATCATCCACTACAATCTGAAACCAAGCAACATTTTACTTGATGAGAACTGCAATCCGATGATATCGGATTATGGACTAGCAAGGCTATTGACAAAGCTGGACAAGCATGTAATAAGCAGCAGGTTTCAGAGTGTTGCCAGTTCTGAAGTTGGCCCTGGTATGCACTTCTCAGATACCTTCAAGCAGGCCTACCATGGCGGAAGTGGTGCAGATACTTCAGGTCATCAAGACCCCAATTCCACAACGGATGGAAGCCTTCTAAATGAAAATCCATGCATTGTAACTTTGTTTTTGGCTTGA 2412 47.39 MANEDVPIQINDDVLGLIVFKSGLHDPSSRLDSWSEDDDSPCSWEFVQCNPSTGRVSEVSVDGLGLSGKIGRGLEKLQNLKVLSLSFNNFSGSISPELALITGLERLNLSHNSLSGRIPSSLSNMTSIRFLDLSHNSLAGPIPDEMFENYSSLRSLSLSMNFLEGPIPSALLRCTTLSNLNLSSNQFSAGDFPQWIGSMSSVEYVDFSGNGFTGSLPASMGNLKSLQFLSLSDNRLTGSIPGSLFYCPKLSVIRLRGNGFSGSIPEGLFDLGLDEVDLSGNELEGPIPPGSSRLFESLHSLDLSRNKLTGSIPAEIGLFSSLRYLNLSWNSLRSRMPPELGYFQNLTVLDLRNTFLFGSIPGDICDSGSLGILQLDGNSLTGPIPDEFGNCSSLYLLSMSHNELNGSIPKSFAMLKKLEILRLEFNELSGEIPRELGSLENLLAVNVSYNRLIGRLPVGGIFQSLDQSALQGNLGICSPLLKGPCKLNVSKPLVLDPYDFGKPINGQNRRNESTTTPMRFRHHMFLSVSAIIAITAAAFILIGVVSMCSSSSRSGSPPTGKLILFDSRASQDWIANPENLLNKAAEIGGGVFGTVYKVSLGGGARMVAIKKLVTSNIIQYPEDFDREVRILGKARHQNLISLKGYYWTPQLQLLVTDYAPNGSLQARLHERPPTTPPLSWPNRFRIILGTAKGLAHLHHSFRPPIIHYNLKPSNILLDENCNPMISDYGLARLLTKLDKHVISSRFQSVASSEVGPGMHFSDTFKQAYHGGSGADTSGHQDPNSTTDGSLLNENPCIVTLFLA* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19716798 19720405 + Vvi5g1085 Vvi5g1085 787227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1085 803 SUPERFAMILY L domain-like 193 467 - -
Vvi5g1085 803 Pfam Protein kinase domain 583 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1085 803 PANTHER BNAA09G02190D PROTEIN 185 750 - -
Vvi5g1085 803 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 185 750 - -
Vvi5g1085 803 SMART LRR_typ_2 319 343 IPR003591 -
Vvi5g1085 803 SMART LRR_typ_2 415 439 IPR003591 -
Vvi5g1085 803 SMART LRR_typ_2 77 100 IPR003591 -
Vvi5g1085 803 SMART LRR_typ_2 125 149 IPR003591 -
Vvi5g1085 803 SMART LRR_typ_2 223 247 IPR003591 -
Vvi5g1085 803 SMART LRR_typ_2 295 318 IPR003591 -
Vvi5g1085 803 SMART LRR_typ_2 101 124 IPR003591 -
Vvi5g1085 803 SUPERFAMILY Protein kinase-like (PK-like) 573 741 IPR011009 -
Vvi5g1085 803 PANTHER BNAA09G02190D PROTEIN 2 188 - -
Vvi5g1085 803 SUPERFAMILY L domain-like 10 271 - -
Vvi5g1085 803 Gene3D Transferase(Phosphotransferase) domain 1 566 756 - -
Vvi5g1085 803 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Vvi5g1085 803 Pfam Leucine rich repeat 370 428 IPR001611 GO:0005515
Vvi5g1085 803 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Vvi5g1085 803 Pfam Leucine rich repeat 79 138 IPR001611 GO:0005515
Vvi5g1085 803 Gene3D Ribonuclease Inhibitor 168 270 IPR032675 -
Vvi5g1085 803 Pfam Leucine rich repeat N-terminal domain 11 50 IPR013210 -
Vvi5g1085 803 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 188 - -
Vvi5g1085 803 MobiDBLite consensus disorder prediction 776 790 - -
Vvi5g1085 803 ProSitePatterns Protein kinases ATP-binding region signature. 587 611 IPR017441 GO:0005524
Vvi5g1085 803 ProSiteProfiles Leucine-rich repeat profile. 225 247 IPR001611 GO:0005515
Vvi5g1085 803 Gene3D Ribonuclease Inhibitor 11 167 IPR032675 -
Vvi5g1085 803 MobiDBLite consensus disorder prediction 769 790 - -
Vvi5g1085 803 ProSiteProfiles Protein kinase domain profile. 581 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1085 803 Gene3D Ribonuclease Inhibitor 272 484 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76644 PF00069 Pkinase 3.50E-26 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1085 - - vvi:100251509 1133.63