Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1086 ATGGCGAACACAATGGCTCGGTCGTTTCTTCAAGTGGCGGCTACGGAGGAGGTTGCTTCGCCGCTCCGAGTAGTTCAGATCGAGGGACTGGTTATATTAAAGATAATCAAACACTGCAAGGAGTTTTCACCTGCTTTGGTCACAGGCCAACTCCTTGGGTTAGATGTTGGCAGTGTTCTTGAAGTCACTAATTGTTTCCCATTCCCGATCCGAGAAGAGGATGAGGAGATTGAAGCAGATGGCGCTAATTATCAGCTCGAAATGATGAGATGCTTGAGAGAGGTTAATGTTGATAATAACACTGTTGGATGGTACCAATCAACTTTGTTGGGTTCTTTTCAGACAGTAGAACTGATTGAGACGTTTATGAATTACCAGGAGAACATAAGACGATGTGTGTGCATTATCTATGATCCCTCAAGGTCCAATCAAGGTGTCTTAGCTCTCAAGGCCTTGAAGCTTTCTGATTCTTTTATGGAACTTTATCGCAACAACAATTTTACTGGAGAGAAGTTGAGGGAGAAAAATTTGTCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTGTCAAACTCTGCCCTTATCAGCGCCTTTATGACAGAGCTGGAAGCAGATACACCGGTGACCCAGTGTGATTATGATCGGCTACAATTGTCAACCAATCCATATATGGAGAGGAATCTAGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAACAAAAGTTCCAATTCTACTATCGCAACCTGTCACGTCAACAAGGACAGCAGCAGGCATGGCTTCAGAAGAGAAGGGCAGAGAACATGGCTCGTAAAACTGCAGGAGAAGACCCCTTGCCCGAGGAGGATCCTGCAAACCCCATCTTTAAGCCAATCCCTGAGCCATCACGGTTGGATAGCTTTCTTATAACAAATCAAATTTCCAACTACTGCAACCAGATTAATGGGGTTGCTGGACAGAGCTTCAGCAGATTGTACTTGATGAAGGCATTACATGAGAATTGA 1014 43.69 MANTMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADTPVTQCDYDRLQLSTNPYMERNLEFLIECMDDLSMEQQKFQFYYRNLSRQQGQQQAWLQKRRAENMARKTAGEDPLPEEDPANPIFKPIPEPSRLDSFLITNQISNYCNQINGVAGQSFSRLYLMKALHEN* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19721252 19736794 - Vvi5g1086 Vvi5g1086 787228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1086 337 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi5g1086 337 MobiDBLite consensus disorder prediction 268 282 - -
Vvi5g1086 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vvi5g1086 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 3 337 - -
Vvi5g1086 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 337 - -
Vvi5g1086 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vvi5g1086 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi5g1086 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Vvi5g1086 337 MobiDBLite consensus disorder prediction 266 294 - -
Vvi5g1086 337 Pfam C-terminal region of eIF3h 143 336 IPR045810 -
Vvi5g1086 337 Gene3D Cytidine Deaminase, domain 2 2 214 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1086 K03247 - vvi:100248036 676.396