Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g1086 | ATGGCGAACACAATGGCTCGGTCGTTTCTTCAAGTGGCGGCTACGGAGGAGGTTGCTTCGCCGCTCCGAGTAGTTCAGATCGAGGGACTGGTTATATTAAAGATAATCAAACACTGCAAGGAGTTTTCACCTGCTTTGGTCACAGGCCAACTCCTTGGGTTAGATGTTGGCAGTGTTCTTGAAGTCACTAATTGTTTCCCATTCCCGATCCGAGAAGAGGATGAGGAGATTGAAGCAGATGGCGCTAATTATCAGCTCGAAATGATGAGATGCTTGAGAGAGGTTAATGTTGATAATAACACTGTTGGATGGTACCAATCAACTTTGTTGGGTTCTTTTCAGACAGTAGAACTGATTGAGACGTTTATGAATTACCAGGAGAACATAAGACGATGTGTGTGCATTATCTATGATCCCTCAAGGTCCAATCAAGGTGTCTTAGCTCTCAAGGCCTTGAAGCTTTCTGATTCTTTTATGGAACTTTATCGCAACAACAATTTTACTGGAGAGAAGTTGAGGGAGAAAAATTTGTCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTGTCAAACTCTGCCCTTATCAGCGCCTTTATGACAGAGCTGGAAGCAGATACACCGGTGACCCAGTGTGATTATGATCGGCTACAATTGTCAACCAATCCATATATGGAGAGGAATCTAGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAACAAAAGTTCCAATTCTACTATCGCAACCTGTCACGTCAACAAGGACAGCAGCAGGCATGGCTTCAGAAGAGAAGGGCAGAGAACATGGCTCGTAAAACTGCAGGAGAAGACCCCTTGCCCGAGGAGGATCCTGCAAACCCCATCTTTAAGCCAATCCCTGAGCCATCACGGTTGGATAGCTTTCTTATAACAAATCAAATTTCCAACTACTGCAACCAGATTAATGGGGTTGCTGGACAGAGCTTCAGCAGATTGTACTTGATGAAGGCATTACATGAGAATTGA | 1014 | 43.69 | MANTMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADTPVTQCDYDRLQLSTNPYMERNLEFLIECMDDLSMEQQKFQFYYRNLSRQQGQQQAWLQKRRAENMARKTAGEDPLPEEDPANPIFKPIPEPSRLDSFLITNQISNYCNQINGVAGQSFSRLYLMKALHEN* | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19721252 | 19736794 | - | Vvi5g1086 | Vvi5g1086 | 787228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g1086 | 337 | SMART | pad1_6 | 24 | 157 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Vvi5g1086 | 337 | MobiDBLite | consensus disorder prediction | 268 | 282 | - | - | |
Vvi5g1086 | 337 | CDD | MPN_eIF3h | 23 | 286 | IPR027524 | GO:0003743|GO:0005737|GO:0005852 | |
Vvi5g1086 | 337 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H | 3 | 337 | - | - | |
Vvi5g1086 | 337 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 3 | 337 | - | - | |
Vvi5g1086 | 337 | Hamap | Eukaryotic translation initiation factor 3 subunit H [EIF3H]. | 20 | 337 | IPR027524 | GO:0003743|GO:0005737|GO:0005852 | |
Vvi5g1086 | 337 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 23 | 126 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Vvi5g1086 | 337 | ProSiteProfiles | MPN domain profile. | 25 | 158 | IPR037518 | - | |
Vvi5g1086 | 337 | MobiDBLite | consensus disorder prediction | 266 | 294 | - | - | |
Vvi5g1086 | 337 | Pfam | C-terminal region of eIF3h | 143 | 336 | IPR045810 | - | |
Vvi5g1086 | 337 | Gene3D | Cytidine Deaminase, domain 2 | 2 | 214 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g1086 | K03247 | - | vvi:100248036 | 676.396 |