Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1087 ATGAGGGATCGTATGGAGAGACTAGTGGTTCTTCCTTTCACCATGGGCTGTGTGTCTGAGTCAAGTGTCTCTGTGGGTGGTGCACTCCAGTTGAAGAAACCAAAATCTGAGCCAAACCCACCTGTAACAAGAAGAAAAGAGGGAGAAGAAAGACCATCTGGGTTGAGATTGAAGGCCTCTTTTAGGTTCTCCAGTAGGCTACAGAAATTGATCAGAACTACTCTCAAAAGTTTCTCTCACTTGTTTGTTTACAAAGAAGTGATGGAGATGGAGATGGAGATAGGGTTTCCAACAGATGTGAAGCATGTGACACACATAGGATGGGATGGGTCTTCTACCAACCCCATTAAAGGGTGGGAAAACCTCAGAACTCCTGAGTTGCTTGCTAATTTTCCTACCATTTCTCTAAGGCAATTTGAGCTTGCCATGGCTGCCCAAGCTCATGACCCTCTTCTTGTCACCTCCTCCAAGCTTATTTAA 480 45.0 MRDRMERLVVLPFTMGCVSESSVSVGGALQLKKPKSEPNPPVTRRKEGEERPSGLRLKASFRFSSRLQKLIRTTLKSFSHLFVYKEVMEMEMEIGFPTDVKHVTHIGWDGSSTNPIKGWENLRTPELLANFPTISLRQFELAMAAQAHDPLLVTSSKLI* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19742596 19743497 - Vvi5g1087 Vvi5g1087 787229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1087 159 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4 1 150 - -
Vvi5g1087 159 Gene3D CRIB domain 90 131 IPR036936 -
Vvi5g1087 159 CDD CRIB 92 122 - -
Vvi5g1087 159 SMART PBD_5 94 126 IPR000095 -
Vvi5g1087 159 Pfam P21-Rho-binding domain 93 114 IPR000095 -
Vvi5g1087 159 ProSiteProfiles CRIB domain profile. 94 107 IPR000095 -
Vvi5g1087 159 MobiDBLite consensus disorder prediction 28 52 - -
Vvi5g1087 159 MobiDBLite consensus disorder prediction 38 52 - -
Vvi5g1087 159 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 1 150 IPR044509 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1087 - - - vvi:100242907 306.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1087 . . Bda03g01082 . . . Bma04g00996 . . . . . . . . . . . . . . . . . Cla08g00382 Cam08g0802 Cec08g0372 Cco08g0472 Clacu08g0515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013937 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 1 2 0 0 1 1 1 0 1 0 1 1 1 1 23