Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1088 ATGTCGAAGTCAGCTCCAACTCTGAAAGCTTCTTATGCCCTTATCATTTTCATATTATGCTTCTTCCGTACATCCTTCTCAAGTGCAACCCATTCTGGTGACATTGAGTTATTAATCACTCTCAGAAACTCTCTTGTCCAAAGAAGAAATGTTATTCCAAGTTGGTTTGACCCAGAGATTCCACCATGCAACTGGACTGGTATAAGATGTGAGGGTTCTATGGTCCAATTTGTGCTTGATGACAATAACTTTTCTGGCAGCTTACCCTCCACCATTGGTATGCTCGGAGAACTTACTGAGCTCTCAGTCCATGCAAACTCATTCTCTGGGAATCTTCCATCAGAACTTGGAAATCTTCAGAATTTGCAGTCCCTTGATCTTAGCCTAAATTCCTTCTCTGGAAACCTACCTTCCAGTTTAGGAAATCTTACGAGGCTCTTTTATTTTGATGCCAGTCAGAACAGATTCACTGGTCCCATTTTTTCAGAGATTGGAAATTTACAGAGGCTTCTATCACTTGATCTCTCATGGAACTCAATGACTGGACCTATACCGATGGAAAAACAATTGAACAGTTTTGAGGGTGAATTGCCCTCAAGCTTTGGCAGGTTGACAAATCTAATTTACCTTCTTGCTGCCAATGCGGGACTTAGTGGAAGGATTCCAGGGGAATTGGGTAACTGCAAAAAGCTCAGGATTCTAAATTTATCCTTCAACTCACTGTCTGGTCCATTACCTGAAGGTCTCAGGGGGCTGGAATCTATTGATTCACTAGTACTTGATTCAAACCGCCTGTCAGGTCCAATTCCCAATTGGATTTCCGACTGGAAGCAAGTTGAGTCCATTATGTTAGCTAAAAACCTGTTTAATGGGTCACTTCCTCCCCTTAATATGCAGACCCTGACCTTACTTGATGTTAATACCAACATGCTTTCTGGTGAGCTGCCTGCAGAAATATGCAAAGCCAAATCATTGACCATTTTAGTGCTATCAGATAACTATTTCACTGGTACTATTGAGAACACCTTCAGGGGATGTTTGAAGCTTCAGCTGGTTACGTTGGAACTGTCAAAAAACAAGTTCTCCGGAAAAATTCCTGATCAACTGTGGGAGTCTAAAACCCTTATGGAGATATTGCTCAGCAACAATTTGCTTGCAGGTCAGCTTCCAGCTGCTCTTGCTAAAGTTTTGACATTGCAGAGGCTGCAGTTGGATAATAATTTCTTTGAAGGGACCATTCCAAGTAACATCGGAGAACTAAAAAATCTCACTAATTTGTCACTGCATGGAAACCAATTGGCTGGAGAGATCCCTTTGGAACTTTTCAATTGTAAGAAGTTAGTATCCCTGGATCTGGGTGAAAACAGGCTTATGGGTTCAATTCCAAAATCTATATCACAGTTGAAACTGCTTGACAATCTGCTTGATTTGTCAAACAACTGGCTAACTGGCTCACTGCCTTCATCCATATTCAGCATGAAGAGCCTGACCTATCTAGACATTAGCATGAATTCTTTCTTGGGTCCCATTTCTCTTGATTCTAGAACCAGCAGTTCTTTGTTGGTTCTAAATGCCAGCAACAACCATTTGTCTGGTACCCTTTGTGACTCGGTATCAAATCTAACATCCCTTTCTATCCTAGATCTTCACAACAACACACTCACAGGCAGCTTGCCTTCTTCACTGTCAAAACTTGTTGCCTTGACATACCTTGATTTCTCCAATAACAATTTCCAAGAGTCTATCCCATGCAATATTTGTGACATAGTAGGCCTTGCCTTTGCCAATTTCTCTGGCAACAGATTCACTGGCTATGCACCAGAGATTTGCTTGAAGGACAAACAGTGCTCAGCACTCCTACCTGTTTTCCCTTCTTCTCAGGGATACCCAGCTGTGAGAGCTCTGACCCAAGCCTCTATCTGGGCTATTGCACTGAGTGCCACTTTCATCTTCCTAGTCCTGCTCATATTTTTTCTCAGATGGAGGATGCTGAGGCAAGATACTGTAAAGCCAAAGGAGACACCTAGCATCAATATTGCAACATTTGAGCACTCTTTGCGGAGGATGAAGCCTTCAGACATCTTATCAGCAACTGAAAACTTCAGCAAGACTTACATTATTGGTGATGGTGGGTTTGGTACAGTTTATAGAGCCTCACTACCAGAGGGCCGAACAATTGCTGTCAAAAGGCTCAATGGAGGACGTCTGCATGGTGACCGGGAATTCCTGGCTGAAATGGAGACAATTGGAAAGGTTAAGCATGAAAACCTGGTCCCACTCCTTGGCTACTGCGTCTTTGACGATGAGAGGTTTTTAATATACGAGTATATGGAGAATGGGAGTCTTGATGTGTGGTTGAGGAACCGGGCAGATGCAGTTGAGGCACTTGACTGGCCAACCCGATTCAAGATCTGTCTGGGCTCAGCCAGAGGGTTGGCCTTTCTGCATCATGGCTTTGTTCCCCACATCATTCACAGAGACATCAAGTCAAGCAATATCTTGTTAGACAGCAAATTCGAGCCACGGGTTTCAGATTTCGGCCTAGCAAGAATCATCAGTGCATGTGAGAGCCATGTTAGTACTGTTCTTGCTGGGACCTTTGGATATATTCCTCCTGAGTACGGGCAGACCATGGTGGCAACAACCAAGGGTGATGTCTACAGCTTTGGGGTAGTGATTCTAGAGCTGGTGACAGGGAGGGCACCAACAGGTCAGGCGGATGTGGAGGGTGGGAATCTGGTGGGGTGGGTGAAGTGGATGGTGGCAAATGGGAGGGAAGATGAGGTGCTGGATCCTTACCTTTCAGCTATGACAATGTGGAAGGATGAGATGTTGCATGTGCTTTCAACAGCTCGATGGTGCACTTTGGACGATCCATGGAGGCGGCCTACCATGGTGGAGGTGGTGAAGCTGTTAATGGAGATTAATCCCGCGACTAACTGA 2943 44.34 MSKSAPTLKASYALIIFILCFFRTSFSSATHSGDIELLITLRNSLVQRRNVIPSWFDPEIPPCNWTGIRCEGSMVQFVLDDNNFSGSLPSTIGMLGELTELSVHANSFSGNLPSELGNLQNLQSLDLSLNSFSGNLPSSLGNLTRLFYFDASQNRFTGPIFSEIGNLQRLLSLDLSWNSMTGPIPMEKQLNSFEGELPSSFGRLTNLIYLLAANAGLSGRIPGELGNCKKLRILNLSFNSLSGPLPEGLRGLESIDSLVLDSNRLSGPIPNWISDWKQVESIMLAKNLFNGSLPPLNMQTLTLLDVNTNMLSGELPAEICKAKSLTILVLSDNYFTGTIENTFRGCLKLQLVTLELSKNKFSGKIPDQLWESKTLMEILLSNNLLAGQLPAALAKVLTLQRLQLDNNFFEGTIPSNIGELKNLTNLSLHGNQLAGEIPLELFNCKKLVSLDLGENRLMGSIPKSISQLKLLDNLLDLSNNWLTGSLPSSIFSMKSLTYLDISMNSFLGPISLDSRTSSSLLVLNASNNHLSGTLCDSVSNLTSLSILDLHNNTLTGSLPSSLSKLVALTYLDFSNNNFQESIPCNICDIVGLAFANFSGNRFTGYAPEICLKDKQCSALLPVFPSSQGYPAVRALTQASIWAIALSATFIFLVLLIFFLRWRMLRQDTVKPKETPSINIATFEHSLRRMKPSDILSATENFSKTYIIGDGGFGTVYRASLPEGRTIAVKRLNGGRLHGDREFLAEMETIGKVKHENLVPLLGYCVFDDERFLIYEYMENGSLDVWLRNRADAVEALDWPTRFKICLGSARGLAFLHHGFVPHIIHRDIKSSNILLDSKFEPRVSDFGLARIISACESHVSTVLAGTFGYIPPEYGQTMVATTKGDVYSFGVVILELVTGRAPTGQADVEGGNLVGWVKWMVANGREDEVLDPYLSAMTMWKDEMLHVLSTARWCTLDDPWRRPTMVEVVKLLMEINPATN* 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19746229 19750105 - Vvi5g1088 Vvi5g1088 787230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1088 980 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Vvi5g1088 980 Gene3D Ribonuclease Inhibitor 191 297 IPR032675 -
Vvi5g1088 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Vvi5g1088 980 Pfam Protein kinase domain 703 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1088 980 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vvi5g1088 980 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Vvi5g1088 980 Gene3D Ribonuclease Inhibitor 298 619 IPR032675 -
Vvi5g1088 980 SMART serkin_6 701 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1088 980 Gene3D Transferase(Phosphotransferase) domain 1 777 980 - -
Vvi5g1088 980 SUPERFAMILY Protein kinase-like (PK-like) 676 973 IPR011009 -
Vvi5g1088 980 PANTHER - 76 190 - -
Vvi5g1088 980 PANTHER - 195 474 - -
Vvi5g1088 980 PANTHER - 475 976 - -
Vvi5g1088 980 PANTHER - 11 76 - -
Vvi5g1088 980 SUPERFAMILY RNI-like 297 604 - -
Vvi5g1088 980 Gene3D Phosphorylase Kinase; domain 1 664 776 - -
Vvi5g1088 980 SMART LRR_typ_2 565 589 IPR003591 -
Vvi5g1088 980 SMART LRR_typ_2 119 143 IPR003591 -
Vvi5g1088 980 SMART LRR_typ_2 541 564 IPR003591 -
Vvi5g1088 980 SMART LRR_typ_2 420 444 IPR003591 -
Vvi5g1088 980 SMART LRR_typ_2 468 493 IPR003591 -
Vvi5g1088 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 195 474 - -
Vvi5g1088 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 475 976 - -
Vvi5g1088 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 11 76 - -
Vvi5g1088 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 76 190 - -
Vvi5g1088 980 ProSiteProfiles Protein kinase domain profile. 701 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1088 980 SUPERFAMILY L domain-like 55 353 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76645 PF00069 Pkinase 3.40E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1088 - - vri:117913854 1158.28