Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g109 ATGTCTCTGAGACCCAGCGCTAGAACCGAGGTTCGCCGGAACCGGTATAAGGTCGCCGTCGATGCCGAGGAAGGCCGGAGACGGAGGGAAGACAACATGGTTGAGATCCGTAAGAGCAAACGCGAGGAGAGCTTGCAGAAGAAGCGTCGTGAAGGTCTCCAGGCTCAGCAGTTCCCTGCCGCTGCTCACGCTTCCACTGTCGAAAAAAAGTTAGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCGGATAATAGCAGTTTGCAGCTGGAGGCCACTACTCAGTTCCGGAAACTGCTTTCTATTGAACGTAGTCCGCCAATTGAGGAAGTTATTCAATCTGGGGTGGTTCCTCGCTTTGTGGAATTTCTTGTTAGGGAGGATTTCCCACAGCTTCAGTTTGAGGCAGCTTGGGCTCTCACAAACATTGCTTCTGGGACATCAGAAAATACCAAGGTGGTAATTGATCATGGAGCAGTGCCAATATTTGTGAAGCTACTTGGTTCTCCAAGTGATGATGTTCGGGAGCAGGCTGTCTGGGCTTTGGGAAATGTTGCTGGTGACTCACCCAGATGCCGTGATCTTGTCCTTGGTCATGGGGCCTTGATTCCATTGCTAGCACAGTTGAATGAGCATGCCAAACTTTCAATGCTAAGAAATGCCACATGGACTCTATCAAACTTCTGCAGAGGCAAGCCTCAGCCACCATTTGATCAGGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTACAAATGACAAAATTCAAGCAGTGATCGAGGCAGGTGTCTGCCCCAGACTTGTTGAGCTCCTCCTTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAGTCTATAATTAATCATGGTGCACTTCCGTGCCTTCTGAGCCTGTTGACCCATAATCATAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAATATTACAGCTGGAAACAAGGAACAGATCCAGGCTGTTATCGAGGCTGGTGTAATTGCCCCCTTGGTTCATTTGCTTCAAACTGCCGAGTTTGATATAAAGAAAGAGGCAGCATGGGCAATATCGAATGCTACTTCTGGTGGCACTCATGAACAAATCAAGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATACTGAAGGTTGGGGAAGCTGAGAAGACTCTAGGCAACAGTGGAGATGTTAATTATTATGCCCAATTGATAGACGATGCTGAAGGGTTAGAAAAGATTGAGAATCTTCAGAGTCATGATAACAATGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATATTGGTTGGAGGAGGAGGATGAAACATTGCCTTCAGGTGATGGTTCCCAGCCTGGTTTCCAATTTGGAGGCAATGATGTTTCAGTTCCATCAGGTGGATTCAACTTTAGCTGA 1590 47.36 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPAAAHASTVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGNDVSVPSGGFNFS* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1148994 1153335 + Vvi5g109 Vvi5g109 786251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g109 529 Pfam Atypical Arm repeat 456 500 IPR032413 -
Vvi5g109 529 Gene3D - 11 50 IPR036975 GO:0006606
Vvi5g109 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vvi5g109 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vvi5g109 529 Gene3D - 72 495 IPR011989 -
Vvi5g109 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 243 270 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 147 186 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 402 439 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 318 356 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 189 230 IPR000225 GO:0005515
Vvi5g109 529 Pfam Armadillo/beta-catenin-like repeat 358 397 IPR000225 GO:0005515
Vvi5g109 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Vvi5g109 529 PANTHER IMPORTIN ALPHA 2 520 - -
Vvi5g109 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 397 IPR000225 GO:0005515
Vvi5g109 529 MobiDBLite consensus disorder prediction 499 529 - -
Vvi5g109 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Vvi5g109 529 SUPERFAMILY ARM repeat 13 499 IPR016024 -
Vvi5g109 529 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Vvi5g109 529 MobiDBLite consensus disorder prediction 22 50 - -
Vvi5g109 529 SMART arm_5 315 356 IPR000225 GO:0005515
Vvi5g109 529 SMART arm_5 358 398 IPR000225 GO:0005515
Vvi5g109 529 SMART arm_5 232 271 IPR000225 GO:0005515
Vvi5g109 529 SMART arm_5 273 313 IPR000225 GO:0005515
Vvi5g109 529 SMART arm_5 147 187 IPR000225 GO:0005515
Vvi5g109 529 SMART arm_5 401 441 IPR000225 GO:0005515
Vvi5g109 529 SMART arm_5 104 145 IPR000225 GO:0005515
Vvi5g109 529 SMART arm_5 188 230 IPR000225 GO:0005515
Vvi5g109 529 MobiDBLite consensus disorder prediction 22 56 - -
Vvi5g109 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 369 IPR000225 GO:0005515
Vvi5g109 529 PANTHER IMPORTIN SUBUNIT ALPHA 2 520 - -
Vvi5g109 529 MobiDBLite consensus disorder prediction 506 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g109 K15042 KPNA5_6; importin subunit alpha-6/7 - vvi:100248248 1053.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g109 Vvi14g130 ECH
Vvi5g109 Vvi7g361 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90