Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1093 ATGGATGATTATAAATTTTGTTTTATAAAAGTGCTTATAGTGTTTTTCTTTTCGAATGATGACCCTCATCCTCCCACACCTCCACAGTCCCTAAAGCCTCTATGGAAGCCATTGTCTCTGCAGCTTGCAAAGCCACCTTCTACCAAACAGCATGCCAGTCAGCTCTCCTCTCATCCACCAATGGCGCTGTCCCTCAAACCCAGGCCGACCTCTTCGATCTTTCAGTGCAGTTCAGCCTCAACCAAGCGCGATCAGCCCACCAACTCACCAACAACCAACACCGCCGGCCACCACCGGAGGCTGCTGTCGGATAGGTTTCCGGGGTGGGTGACGGCGGCGGAAAGGAAGCTTCTGGAAGCTTCTGTAGAGGAGATTGGGGCCACTGCAGTGGTGGCCAAGGATGGCAGTGGGACACACAAGACAATTGGTGAGGCTTTAGCGATGGTGGTCACATTGGAGGGCGAGGGTAGAACCGTAATTCACGTGAAAGCTGGGACTTATGACGAGGGTCTTAAGATCCCTTCCAGCCAAAAAAACGTTATGTTAGTAGGTGACGGGAAGGGCAAAACCGTCATTGTGGGTCACAAAAGTTACGCTGGCGGCTCCTCAACCTACGATTCCGCCACCGTCGGTGTGATGGGCGATGGATTCATTGCTCGGGACATAACCATTGAGAACGATGCGGGTCCGGGCAAGGGGCAGGCTGTTGCCCTTCGAGTCGGATCGGATCGATCTGTGGTCTTCCGATGCTCCATTATCGGTTACCAGGACACCCTCTACACTCTCTCCAAGCGTCAATTCTACAGAGAGACTGATATATATGGGACCGTAGACTTCATTTTCGGAAACTCCGCGGTTGTCTTCCAGAGCTGCAACCTTAACGCCAGAAAATCCAGCAATAACAACTTCGTGACGGCCCAGGGCCGGGAGGATCCCAATCAGAACACCGGAATCTCGATACATAACTGCAAGATCACGACAGAGGGGTCCACCACGTATCTTGGCCGACCCTGGAAGAAGTATTCCAGAACTGTGATCATGCAGTCATACTTGGATGGCTCAATTCCCCCTTCCGGGTGGTATCCCTGGTCTGGAAGCTTTGCCCTGAGCACATTGTTTTACGGCGAGTACATGAATGCAGGGCCTGGGGCGTCAACGTCCGGGCGGGTCAAGTGGGGTGGGTACCAGGGTGAACTCACGGCCAGTGTCGCTCAAGAGTTCACTGTTGGGGAATTCATATCTGGGAACGCCTGGCTGCCCTCGACTGGGGTATCTTTCGATTCAGGGCTGATTAATTAG 1299 53.04 MDDYKFCFIKVLIVFFFSNDDPHPPTPPQSLKPLWKPLSLQLAKPPSTKQHASQLSSHPPMALSLKPRPTSSIFQCSSASTKRDQPTNSPTTNTAGHHRRLLSDRFPGWVTAAERKLLEASVEEIGATAVVAKDGSGTHKTIGEALAMVVTLEGEGRTVIHVKAGTYDEGLKIPSSQKNVMLVGDGKGKTVIVGHKSYAGGSSTYDSATVGVMGDGFIARDITIENDAGPGKGQAVALRVGSDRSVVFRCSIIGYQDTLYTLSKRQFYRETDIYGTVDFIFGNSAVVFQSCNLNARKSSNNNFVTAQGREDPNQNTGISIHNCKITTEGSTTYLGRPWKKYSRTVIMQSYLDGSIPPSGWYPWSGSFALSTLFYGEYMNAGPGASTSGRVKWGGYQGELTASVAQEFTVGEFISGNAWLPSTGVSFDSGLIN* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19871693 19875293 - Vvi5g1093 Vvi5g1093 787235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1093 432 Pfam Pectinesterase 129 416 IPR000070 GO:0030599|GO:0042545
Vvi5g1093 432 Gene3D - 122 430 IPR012334 -
Vvi5g1093 432 SUPERFAMILY Pectin lyase-like 126 428 IPR011050 -
Vvi5g1093 432 MobiDBLite consensus disorder prediction 43 100 - -
Vvi5g1093 432 ProSitePatterns Pectinesterase signature 2. 273 282 IPR033131 -
Vvi5g1093 432 PANTHER PECTINESTERASE 81 429 - -
Vvi5g1093 432 MobiDBLite consensus disorder prediction 68 97 - -
Vvi5g1093 432 ProSitePatterns Pectinesterase signature 1. 154 173 IPR018040 -
Vvi5g1093 432 MobiDBLite consensus disorder prediction 43 60 - -
Vvi5g1093 432 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 35-RELATED 81 429 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1093 - - vvi:100244703 692.575