Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1094 ATGGATTTGGACCCAGATGATATTTTCAAGGACGACGAAGACGACCCAGATAATGACCTGGAAAAAGCATCGACCAAAGAGTTTGTGGTTTATCTTGTGGATGCTTCGCCCAAAATGTTCAGCACCACTTTTCAAGGGGAAGATCAAAAGGATGAAACTCCTTTTCATGCTGCCGTTAGCTGTATTTCCCAGTCACTGAAGACTCAAATCATCAATAACTCTAATGATGAAGTAGCAATATGCTTCTTCAACACTAGGGAAAAGAAGAATTTGCAGGACTTGAATGGAGTTTTTGTATTTAATGTTGCTGAAAGGGAGTACTTGGACAGGCCTACTGCTAGGCTAATAAAAGAATTTGATCGTATAGAAGAATTGTTCATGAAAGAAATTGGGAGTCAGTATGGTATCATGTCTGGATCTCGCGAAAATTCTCTTTACAATGCTCTCTGGGCGGCACAAGCGTTGCTGCGTAAAGGGTCTGCAAAGACAGCTGATAAGCGAATACTCTTGTTTACGAATGAAGACGACCCTTTTGGGAGTATCACAGGGGCAACAAAAATGGATATGACAAGAACCACGTTGCAACGGGCTAAAGATACACAAGATCTTGGCATCTCAATTGAACTCCTCCCCTTGAGTTGCCCTGACGAGGAATTTAATGTTTCTGCTTTTTATGCTGATTTAATAGGATTGGAAGGTGATGACCTTGCTCTATTTATGCCCTCAGTAGGGGACAAATTGACAGACATGAAAAATCAGCTGAGAAAGCGTATGTTTAAGAAGCGTGTGGTTAGAAGAATCACATTTTCAATTGTCAAAGGCCTATCTATTGAACTGAATACATATGCTTTGATCCGTCCGACTGTTCCTGGGACAATTACCTGGCTTGACTCTATCACCAACCTTCCTTTAAAGACAGAGAGATCTTTCATCTGTGCAGATACTGGGGCTTTGGTTCAACCAACTAAACGTTTTCATCCTTATAAAAATAAAAATGTTAAGTTTACAACAGAAGAGCTATCAGAAGTGAAAAGAATTTCAACTGGACATCTTCGCCTTCTAGGATTCAAACCTTTGAGTTGCTTAAAAGATTACCACAACTTGAGGCCATCAACATTCGTTTTTCCTACTGACAAGGAAGTGGTTGGTAGTACTTGCATTTTTATTGCCCTCCATAGATCCATGTTAAGGCTTAAACGTTTTGCAGTTGCATTTTATGGCGGTTCAGCTCATCCTCAATTGGTTGCCCTTGTTGCACAAGATGAGATCATTGCTGGTGGTGTTCAGGTTGAGCCACCAGGCATGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAGCTTCATTCGGATATAACTGTCCCAACACCTCGAGCAACTGATGATCAAATAAAAAAGGCCACTGCTTTAATGAGGCGCATAGACTTGAAGGATTTTTCAGTATGCCAATTTGCCAATCCGGCCTTGCAGAGACATTATGCAGTGCTACAGGCTCTAGCCCTGGAAGAAGATGAGATGCCTGAAATCAAAGACGAAACTCTTCCAGATGAGGAAGGGATGGCTAGACCAGGAGTTGTCAATGCATTGGAAGAATTCAAGAAGTCTGTCTATGGGGAAAACTACAATGAAGAAGATGAAGGTCATGGAAAAGCAAGTGATGCCTCCAAAAAACGAAAAGCTGTTGCTGAAAATGCTGTTAAGGAATCAGCAAAATATGACTGGGCTGACCTTGCAGACAATGGAAGGTTGAAAGATTTGACGACAGTGGAGTTGAAGTACTACCTGACGGCGCATAACCTTGCAGTTGGTGGAAAGAAGGAAGTTTTGATCAGCAGGATCTTAACTCACATGGGAAAATGA 1872 41.4 MDLDPDDIFKDDEDDPDNDLEKASTKEFVVYLVDASPKMFSTTFQGEDQKDETPFHAAVSCISQSLKTQIINNSNDEVAICFFNTREKKNLQDLNGVFVFNVAEREYLDRPTARLIKEFDRIEELFMKEIGSQYGIMSGSRENSLYNALWAAQALLRKGSAKTADKRILLFTNEDDPFGSITGATKMDMTRTTLQRAKDTQDLGISIELLPLSCPDEEFNVSAFYADLIGLEGDDLALFMPSVGDKLTDMKNQLRKRMFKKRVVRRITFSIVKGLSIELNTYALIRPTVPGTITWLDSITNLPLKTERSFICADTGALVQPTKRFHPYKNKNVKFTTEELSEVKRISTGHLRLLGFKPLSCLKDYHNLRPSTFVFPTDKEVVGSTCIFIALHRSMLRLKRFAVAFYGGSAHPQLVALVAQDEIIAGGVQVEPPGMHMIYLPYSDDIRHIEELHSDITVPTPRATDDQIKKATALMRRIDLKDFSVCQFANPALQRHYAVLQALALEEDEMPEIKDETLPDEEGMARPGVVNALEEFKKSVYGENYNEEDEGHGKASDASKKRKAVAENAVKESAKYDWADLADNGRLKDLTTVELKYYLTAHNLAVGGKKEVLISRILTHMGK* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19895339 19909576 + Vvi5g1094 Vvi5g1094 787236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1094 623 PANTHER KU AUTOANTIGEN DNA HELICASE 2 623 - -
Vvi5g1094 623 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g1094 623 Pfam Ku70/Ku80 beta-barrel domain 272 469 IPR006164 GO:0003677|GO:0006303
Vvi5g1094 623 ProSiteProfiles SAP motif profile. 587 621 IPR003034 -
Vvi5g1094 623 SMART ku_4 314 457 IPR006164 GO:0003677|GO:0006303
Vvi5g1094 623 MobiDBLite consensus disorder prediction 1 18 - -
Vvi5g1094 623 Pfam Ku70/Ku80 C-terminal arm 482 563 IPR005160 GO:0003677|GO:0003678|GO:0006303
Vvi5g1094 623 CDD vWA_ku 26 257 - -
Vvi5g1094 623 Gene3D SAP domain 566 623 IPR036361 -
Vvi5g1094 623 SUPERFAMILY SPOC domain-like 262 544 IPR016194 -
Vvi5g1094 623 Pfam Ku70/Ku80 N-terminal alpha/beta domain 28 262 IPR005161 -
Vvi5g1094 623 TIGRFAM ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70) 24 621 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Vvi5g1094 623 SUPERFAMILY vWA-like 26 261 IPR036465 -
Vvi5g1094 623 CDD KU70 262 540 - -
Vvi5g1094 623 Gene3D Ku70, bridge and pillars 287 347 IPR027388 -
Vvi5g1094 623 PANTHER X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 6 2 623 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Vvi5g1094 623 SMART sap_9 587 621 IPR003034 -
Vvi5g1094 623 Gene3D - 262 442 IPR016194 -
Vvi5g1094 623 Gene3D von Willebrand factor, type A domain 26 258 IPR036465 -
Vvi5g1094 623 SUPERFAMILY SAP domain 576 621 IPR036361 -
Vvi5g1094 623 PIRSF Ku70 2 623 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Vvi5g1094 623 Gene3D - 443 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1094 K10884 XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1 - vvi:100265198 1207.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1094 . . . . . Bpe14g01051 . . . . . . . . . . . Bhi01g02623 . . . . . Lcy11g1238 . . . . . . . . . Cone18ag0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010821 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32