Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1095 ATGGATCTCCCCAGCCTCGCTGTCATTCTCCAAGCCGCTCTCAGTCCCAATCCCGATCAGTTAAAGGCCGCCGAAGAGTCTCTCAATCAGTTCCAGTATACTCCACAGCATCTGGTGAGGTTATTGCAAATCATTGTGGATGGGAATTGTGATATGGCTGTAAGACAGGTTGCTAGTATTCATTTCAAGAACTTTATTGCAAAGAACTGGTCACCTCATGAGCCTGACGAGCAACAGAAGATATCACAGAGTGATAAAGAAATGGTGAGGGATAACATTCTTGTGTATGTTGCCCAGGTGCCCCCCTTGTTGAGGGCACAACTAGGTGAGTGTCTCAAGACAATTGTCCATGCTGATTACCCTGAGCAGTGGCCCAGGCTTTTGGACTGGGTAAAGCATAACTTGCAAGATCAGCAAGTATATGGAGCTTTGTTTGTATTGCGGATTCTTTCTAGAAAATATGAATACAAAAGACCTTCAATTTTACCGAGTCTTATAATCGTCATTGCTCCAAATCTGAATAACTTTTTGAAGCTTTGGGTGAGTGAGCCTATTCCATTGCATGAATTGAATGAGAATGAATGTATTTTCACACCTCACAAGTTTAAGTCAGATGAAGAAAGGACACCAGTTCATCGCATTGTTGAGGAGACATTTCCTCATCTGCTCGGTATCTTTAACAGGCTTGTCCAGATTGTCAACCCTCCACTGGAAGTAGCAGAGTTGATCAAGCTTATCTGTAAAATTTTCTGGTCATCCATTTATTTGGAGATTCCAAAGCAGCTGTTCGATCCCAATGTATTCAACTCTTGGATGATTCTTTTCTTGAATGTTCTGGAGAGGCCTGTTCCTTTAGAAGGCCAGCCCGCAGATCCAGAGCTTAGGAAATCCTGGGGATGGTGGAAGGTGAAGAAATGGACAGTTCATATTTTAAATAGGCTGTACACCCGGTTTGGAGACTTGAAACTTCAAAACCCTGAAAACAGAGCTTTTGCCCAAATGTTTCAGAAGAATTTTGCAGGGAAGATTTTGGAGTGCCACTTAAATTTGTTGAATGTGATCCGTATGGGTGGTTATTTACCTGACAGAGTTATTAACCTTATTCTGCAATACCTAAGCAACAGTATCTCAAAGATGAGTATGTATCAGTTGCTGCAACCACGGCTCGATGTTCTTCTCTTTGAGATAGTTTTTCCCCTTATGTGCTTTAATGACAATGATCAAAAGCTTTGGGATGAAGATCCACATGAGTATGTAAGGAAGGGTTATGATATCATTGAAGATTTGTATAGTCCTAGGACTGCTGCCATGGATTTTGTGAGTGAGTTGGTTAGAAAACGCGCAAAAGAGAACCTTCATAAGTTTATTCAATTTATCGTAGAAATCTTTAAAAGGTATGATGAGGCCTCACTGGAATATAAAGCCTATCGGCAGAAAGATGGTGCACTTCTTGCTATTGGAGCCCTTTGTGATAAGCTGAAACAGACAGAACCCTACAAGTCTGAGCTTGAGCATATGTTGGTGCAACATGTTTTCCCTGAGTTCAGCAGTCCTGTTGGCCATCTTAGAGCCAAGGCTGCATGGGTTGCGGGACAATATGCCCACATTAATTTCTCAGATCAGAATAATTTCCGGAAAGCGCTGCATAGTGTTGTTTCTGGGTTGCGCGATCCTGAGCTTCCAGTTCGTGTTGATTCAGTGTTTGCATTGCGTTCTTTTGTTGAAGCATGCAAAGATTTGAATGAGATCCGTCCAATTCTTCCTCAACTTCTTGATGAGTTTTTCAAACTTATGAATGAGGTTGAGAATGAGGATCTCGTGTTTACACTTGAGACAATTGTCGACAAGTTTGGGGAGGAGATGGCACCTTATGCTCTTGGATTATGCCAGAATTTGGCTGCTGCATTTTGGAGGTGTATGAACACTGCTGAAGCTGACGATGAAGCTGATGATCCTGGTGCTTTGGCTGCAGTTGGTTGTTTGCGTGCTATAAGCACAATTCTTGAATCAGTGAGCAGGCTTCCTCACCTTTTTGTGCAGATCGAGCCAACACTGCTTCCTATAATGCGTCGGATGTTGACAACTGATGGCCAAGAGGTTTTTGAAGAGGTTTTGGAAATTGTATCATATATGACATTTTTTTCCCCGACAATCTCCTTGGAAATGTGGAGCCTTTGGCCTTTGATGATGGAAGCACTGGCAGATTGGGCAATCGATTTTTTTCCCAATATTCTGGTTCCATTGGACAACTATATATCCCGAAGTACTGCTCATTTTCTCACATGCAAGGATCCAAACTATCAGCAAAGCCTTTGGGATATGATTTCAACAATCATGCCAGATAGAAATATGGAGGATAGTGATATTGAACCCGCTCCTAAGCTCATTGAAGTAGTGTTTCAGAATTGCAGAGGTCAGGTAGATCAATGGGTTGAGCCATATCTCAGAATCACAGTTGAGCGGTTGCGTCGAGCAGAGAAGCCATACTTGAAATGTCTACTCATTCAAGTGATTGCAGATGCTCTCTACTACAATGCAGCCTTGACTCTCAGCATATTGCACAAGTTAGGTGTTGCCACAGAAATTTTTGGCCTTTGGTTCCAGATGTTGCAGCAAGTTAAAAAGAGCGGTGTTCGGGCAAATTTCAAGAGGGAACATGATAAAAAAGTTTGCTGCCTGGGGTTAACATCACTGCTCGCACTTCCAGCTGATCAGCTGCCAGGGGAGGCCTTGGGACGTATTTTCAGGGCCACTCTTGATCTACTAGTTGCATACAAGGATCAAGTGGCAGAAGCTGCAAAGGAGGAAGAGGCCGAAGACGATGATGATGATATGGATGGTTTCCAAACAGATGATGAAGATGAAGATGGTGATGGTTCTGACAAAGAAATGGGATTTGATGCGGAGGATGGGGATGAAGCTGACAGTATTAGACTTCAGAAGTTAGCAGCACAGGCAAAGGACCTTCGCCCAAATGATGAGGACGATGATGACTCGGATAATGATTACAGTGATGATGAAGAGTTGCAATCACCTATTGATGAGGTGGACCCTTTCATTTTCTTCGTGGATACTGTCAAAGCCATGCAAGCATCAGATCCATTGAGGCTCCAGAACCTTACACAGACGCTTGACTTCCATTATCAAGCACTTGCTAATGGTGTTGCCCAGCATGCTGAACAGAGGCGGGTAGAGATTGAAAAGGAAAAAATGGAGAAGGCATCAGCTGGGGGTGCCTTATGA 3243 43.17 MDLPSLAVILQAALSPNPDQLKAAEESLNQFQYTPQHLVRLLQIIVDGNCDMAVRQVASIHFKNFIAKNWSPHEPDEQQKISQSDKEMVRDNILVYVAQVPPLLRAQLGECLKTIVHADYPEQWPRLLDWVKHNLQDQQVYGALFVLRILSRKYEYKRPSILPSLIIVIAPNLNNFLKLWVSEPIPLHELNENECIFTPHKFKSDEERTPVHRIVEETFPHLLGIFNRLVQIVNPPLEVAELIKLICKIFWSSIYLEIPKQLFDPNVFNSWMILFLNVLERPVPLEGQPADPELRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNFAGKILECHLNLLNVIRMGGYLPDRVINLILQYLSNSISKMSMYQLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRAKENLHKFIQFIVEIFKRYDEASLEYKAYRQKDGALLAIGALCDKLKQTEPYKSELEHMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACKDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADDEADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRSTAHFLTCKDPNYQQSLWDMISTIMPDRNMEDSDIEPAPKLIEVVFQNCRGQVDQWVEPYLRITVERLRRAEKPYLKCLLIQVIADALYYNAALTLSILHKLGVATEIFGLWFQMLQQVKKSGVRANFKREHDKKVCCLGLTSLLALPADQLPGEALGRIFRATLDLLVAYKDQVAEAAKEEEAEDDDDDMDGFQTDDEDEDGDGSDKEMGFDAEDGDEADSIRLQKLAAQAKDLRPNDEDDDDSDNDYSDDEELQSPIDEVDPFIFFVDTVKAMQASDPLRLQNLTQTLDFHYQALANGVAQHAEQRRVEIEKEKMEKASAGGAL* 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19911021 19937061 - Vvi5g1095 Vvi5g1095 787237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1095 1080 Pfam Cse1 241 496 IPR013713 GO:0006886
Vvi5g1095 1080 PANTHER IMPORTIN-7, 8, 11 200 1067 - -
Vvi5g1095 1080 PANTHER IMPORTIN-7, 8, 11 1 158 - -
Vvi5g1095 1080 SUPERFAMILY ARM repeat 1 1055 IPR016024 -
Vvi5g1095 1080 SMART IBN_N_2 24 99 IPR001494 GO:0006886|GO:0031267
Vvi5g1095 1080 Gene3D - 1 164 IPR011989 -
Vvi5g1095 1080 Gene3D - 187 1051 IPR011989 -
Vvi5g1095 1080 PANTHER IMPORTIN-7-LIKE PROTEIN-RELATED 1 158 - -
Vvi5g1095 1080 PANTHER IMPORTIN-7-LIKE PROTEIN-RELATED 200 1067 - -
Vvi5g1095 1080 MobiDBLite consensus disorder prediction 934 970 - -
Vvi5g1095 1080 MobiDBLite consensus disorder prediction 932 1011 - -
Vvi5g1095 1080 MobiDBLite consensus disorder prediction 993 1011 - -
Vvi5g1095 1080 Pfam Importin-beta N-terminal domain 24 99 IPR001494 GO:0006886|GO:0031267
Vvi5g1095 1080 ProSiteProfiles Importin-beta N-terminal domain profile. 24 99 IPR001494 GO:0006886|GO:0031267
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1095 K20223 IPO7, RANBP7; importin-7 - vvi:100259995 1982.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1095 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00390 Cam08g0809 Cec08g0380 Cco08g0478 Clacu08g0521 . Cre08g0349 . . Cone18ag0868 Cone11ag0640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004088 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 1 43