Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1096 ATGTCTGGATCAGATCATTCCTCTGGTTTTGATCAGCCAAGGTTGGTGGTCAAGAAGGTCTTGGCCAAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAGGAGTGAATTGAAAAACCTGGATCCTTTTCTCATGTTGGATGAGTTCGCAGTTGCACCGCCTGCTGGTTTTCCGGATCATCCACACAGAGGCTTTGAGACTGTTACATACATGCTGCAGGGAGCTTTCACTCATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAGTGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAAGGAACCCAAAAGGGCTTGCAGCTTTGGATCAATCTAGCATCCAAAGACAAAATGATTGAACCAAATTACCAAGAATTGCCGAGTGAGGACATCAAAAGAGCAGAGAAAGATGGCGTTGAAGTCCGGGTCATAGCAGGAGAATCAATGGGAGTCCGGTCCCCAGTTTACACCAGAACTCCAACAATGTATCTTGATTTTACTCTAAAACCAAGGGCCCAAATGCATCAAAGCATTCCAGAATCATGGAACTCCTTTGTGTACATAGTTGAAGGGGAAGGAGTATTCGGGGTAGTGAACTCATCTCCAGTGACCGCTCACCATGTCTTGGTTTTAGGCCCTGGTGACGGCCTGAGCGCGTGGAACAAGTCATCCAAACCGCTGAGATTTGTGCTCATTGGAGGCCAGCCTCTGAACGAACCTGTTGTCCAGTATGGCCCTTTTGTCATGAACACACAGAAAGAAATTGAACAAACTATTGAGGACTATCACTATAGCAAGAATGGATTTGAGATGGCCAAGTACTGGAGATCCCAGTAA 885 47.34 MSGSDHSSGFDQPRLVVKKVLAKPQREGEGAVVRRSIGRSELKNLDPFLMLDEFAVAPPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPADEGTQKGLQLWINLASKDKMIEPNYQELPSEDIKRAEKDGVEVRVIAGESMGVRSPVYTRTPTMYLDFTLKPRAQMHQSIPESWNSFVYIVEGEGVFGVVNSSPVTAHHVLVLGPGDGLSAWNKSSKPLRFVLIGGQPLNEPVVQYGPFVMNTQKEIEQTIEDYHYSKNGFEMAKYWRSQ* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19947203 19951503 - Vvi5g1096 Vvi5g1096 787238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1096 294 CDD cupin_pirin_N 31 128 - -
Vvi5g1096 294 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Vvi5g1096 294 Gene3D Jelly Rolls 148 253 IPR014710 -
Vvi5g1096 294 PIRSF Pirin 12 292 IPR012093 -
Vvi5g1096 294 PANTHER PIRIN-RELATED 5 294 IPR012093 -
Vvi5g1096 294 Gene3D Jelly Rolls 27 279 IPR014710 -
Vvi5g1096 294 CDD cupin_pirin_C 176 252 - -
Vvi5g1096 294 Pfam Pirin 33 126 IPR003829 -
Vvi5g1096 294 PANTHER PIRIN-LIKE PROTEIN 5 294 - -
Vvi5g1096 294 SUPERFAMILY RmlC-like cupins 14 292 IPR011051 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1096 K06911 - vvi:100254895 604.749