Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1097 ATGAAGAAGCCCTCACGACTGGGCCCTAAGGCACCTAATCCAAAATCTAAATTCAACAACAACAAGAAGAAGCTTAATAACATTGACAAGAAGAAGAACAAAAACGACAGCAGCGACAAGGTGGGAGCCAAGAAACCCAAGCCTCAAGCAGAGCCCATTTCACCCTCACAGCAGCTGAATTTCTTTCTGGACCAATTTCAATCCGCCAATAATCTTCAGCTTTCTTCCCTCGAATCCGACTCTCTCACTGAAGCATGCGTTTTGGATCTATCTCAAGGCCTTGACCAAGAGGTTAGCACCTTAGGGAAACAAGTGAAGGCTGCTTTCGGGCCTTCATGGAAAGAAGTGCTTTGTGAGGGTCAGCTCATGGAAGGAAAAATTGATCCTGGCAATCCAGCAGTTCTTATCATAAGCGCATCTGCTCTACGATCATTGGAGTTTCTTAGGGGCTTACGGCCATTGACTAGAGAATGCCCTGCTGCCAAGCTGTTCTCAAAGCATATGAAGGTTGATGATCAGGTATCCATTTTAAAGAACCGTGTTAATATTGCCAGCGGTACACCTAGCAGGATCAAGAAGTTAATTGACGTGGAAGCATTAGGGCTTTCAAGATTATCGATAATTGTGCTTGACATGCACACAGACGTCAAGGGATATTCCTTGTTTACGCTTCCACAAGTCAGGGAAGAGTTCTGGGACTTGTACAAGAACTACTTTCACCAACGACTTCTTCAAGGTGATACACAGATCTGTCTCTTTGGTAGAATACCAATTGGGACTGACGGTAAGAAAAAACAGAACAAACAAGTTAGTGAACAATAA 822 43.92 MKKPSRLGPKAPNPKSKFNNNKKKLNNIDKKKNKNDSSDKVGAKKPKPQAEPISPSQQLNFFLDQFQSANNLQLSSLESDSLTEACVLDLSQGLDQEVSTLGKQVKAAFGPSWKEVLCEGQLMEGKIDPGNPAVLIISASALRSLEFLRGLRPLTRECPAAKLFSKHMKVDDQVSILKNRVNIASGTPSRIKKLIDVEALGLSRLSIIVLDMHTDVKGYSLFTLPQVREEFWDLYKNYFHQRLLQGDTQICLFGRIPIGTDGKKKQNKQVSEQ* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19967431 19975143 + Vvi5g1097 Vvi5g1097 787239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1097 273 PANTHER PROTEIN CMSS1 16 253 IPR032704 -
Vvi5g1097 273 MobiDBLite consensus disorder prediction 1 54 - -
Vvi5g1097 273 MobiDBLite consensus disorder prediction 22 46 - -
Vvi5g1097 273 Pfam U3-containing 90S pre-ribosomal complex subunit 40 253 IPR032704 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1097 - - K14784 vvi:100251412 486.108
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1097 . . . . . . . . . . . Cma14g01511 . Car14g01334 . . Cpe03g01268 . . . . . . . . . . . . . . . . . Cone11ag0633 . . . Cme07g01842 . Blo07g00102 Bda11g00471 . . . . Bma06g01431 . . Cmo14g01544 . . . . . . . . . . . . . Cla07g01591 Cam07g1687 Cec07g1784 Cco07g1745 Clacu07g1671 Cmu07g1638 Cre07g2012 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010982 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30