Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1098 ATGGCCTCCGTAGGCCATTCACCACTTGCATCCTCTCTGAAGCGATGCTCCTCCCACCTCTCTTCAAATCTGAGCTCTACTCCTCCTCTCAACTCTCTATTAATTCACACTCAGTTCATTTCGTCAATTTCCTCTCAACAACCCATCAAAATCACTCCCAATGAAGGACTCAAAGCGGCTACCAAAACCAAAAGATCCCAAGCCATGGCTCGTCTCATCAACACTGAACCATGGTCGCACGAACTCCAGTCGTCTCTGGCCGAACTCGCCCCCTCCCTCTCCAAGACCACTGTCCTCCAAACCCTCCAACTCATCAGAACCCCTGCAAAAGCGTTGCATTTTTTCAGATGGGTGGAGGCCAAAGGCTTCACCCACAATGAGCAATCATATTTCTTGATGATTGAAATTCTGGGTCGAAGCCGAAACCTCAATGCGGCTCGGAATTTTGTCTTCTCCATCGAGAAGAAGTCGGGTGGGGCGGTTAAGCTTGGGGATAGATTCTTTAATAGCTTGATTAGGAGCTACGGATGGGCAGGGTTGTTTCAGGAGTCGATTAAGGTTTTTAAGACGATGAAGGAGATTGGGGTGTCGCCTTCTGTGGTTACATTTAACAGTCTTTTATCGATTGTGCTTAAGCGGGGTCGAACCAGTATGGCAAAGCAGCTGTTTGATGAAATGCTTGATACGTATGGGGTTACGCCTGATACGTACACTTTTAACATTTTGATAAGAGGGTTTTGTATGAACTCAATGGTGGATGAAGGGTTTTGGTTTTTCAAAGAAATGTCGCGTTTTAAGTGTGACCCAGATGTTGTTACATATAATACTCTTGTTGATGGCCTTTGTAGGGCAGGGAAGGTGAAAATTGCGCATAATGTTGTGAAGGGTATGGTCAAGAAAAGTCCAAATTTGAGTCCCAATGTTGTTACTTATACAACTTTGATTAGAGGGTATTGTATGAAGCAGGATATGGCGGAGGCTTTGAGTTTGTTAGCAGAGATGGTTAGCCGAGGACTGAAACCAAATAAGATTACTTATAATACGCTTATTCAAGGGCTTTGTGAGGCTCAGAAGCTTGATAAGATAAAGGAGATTTTGGAGGGAATGGTAGGGGACGGAGGATTCATACCTGATACATGTACCCTCAATACATTGATCAAAGCCCACTGCACTATGGGAAAGTTGGAGGAAGCATTCAGCGTATTTGAGAAAATGTCGGAATTACGGGTCCAGCCTGATTCAGCTACATACAGTGTGCTGGTTAGGAGTTTGTGCCAGAGAGGGGATTTCAGGAGAGCAGAGGAGTTCTTTGATGAGTTAGCAGAGAAGGAGATCTTGCTTCATGATGTAGGATGTAAGCCTCTTGTTGCAGCGTATAATCCCATGTTTGAGTATCTTTGTAGTAATGGGAAAACAAAGAAGGCTGAGAGAGTCTTTAGGCAGCTAATGAAAAGAGGGACACAAGATCCTCCATCTTACAAGACTTTGATCCTGGGGCACTGTAGGGAAGGTACACCAGAAGCTGGGTTTGATCTCTTGGTCCTGATGTTAAGAAGAGATTTTGTGCCTGATGCTGAGACTTATGGGTTGATGATTGATGGCCTTTTGAAGAAGGGTGATCCTGTTCTTGCCCATAAAAGTCTAGAGAAGATGTTAAAGAGCTCTCATCTTCCTACTACGGCTATATTCCATTCCATACTTGCCGCACTTGTGGAAAAAGGTTGTGCTCATGAATCTGCTAGCCTTGTAAAACTGATGTTAGAGAGAAGGATTAGACAAAATATTGATCTCTCAACACATACTATGGAAGAATTGGTTTCCTTTCTTTGCCAGAGTAGAAAGCTACTAGAGGCACAGAAAATGTTGCTATTTAGTTTGGAGAAGCGACAGAGTGTCGATATTGATATGTGCAGCACAGTTATAAGTGGCCTTTGTAAGGCCCATAAGGTTTCAGAAGCATTTGCTTTATACTATGAATTGGTGGAGAAAGGAATGCAACATCGCTTAACCTGCCAAGAAGATTTGAGAATTTCCTTGGAGGCTGAGGGAAGGTTGAATGAAGCCAAGTTTGTTTCTAAGAAGATGCCAGAAGTCCCAAAACAGTGGCAATCAGATAGAACTGGTCCAAAAGTCAGCTCTAGAATGGCAAGACCTTGA 2157 43.72 MASVGHSPLASSLKRCSSHLSSNLSSTPPLNSLLIHTQFISSISSQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKMPEVPKQWQSDRTGPKVSSRMARP* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19975588 19979672 - Vvi5g1098 Vvi5g1098 787240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1098 718 Gene3D Tetratricopeptide repeat domain 451 592 IPR011990 GO:0005515
Vvi5g1098 718 Gene3D Tetratricopeptide repeat domain 593 687 IPR011990 GO:0005515
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat family 306 354 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat family 198 247 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat family 377 426 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat family 492 537 IPR002885 -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Vvi5g1098 718 Gene3D Tetratricopeptide repeat domain 229 297 IPR011990 GO:0005515
Vvi5g1098 718 Gene3D Tetratricopeptide repeat domain 370 447 IPR011990 GO:0005515
Vvi5g1098 718 Gene3D Tetratricopeptide repeat domain 54 228 IPR011990 GO:0005515
Vvi5g1098 718 Gene3D Tetratricopeptide repeat domain 298 369 IPR011990 GO:0005515
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat 267 298 IPR002885 -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat 168 196 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat 636 664 IPR002885 -
Vvi5g1098 718 Pfam PPR repeat 458 486 IPR002885 -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Vvi5g1098 718 MobiDBLite consensus disorder prediction 694 718 - -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Vvi5g1098 718 PANTHER ATPASE EXPRESSION PROTEIN 3 17 609 - -
Vvi5g1098 718 PANTHER ATPASE EXPRESSION PROTEIN 3 623 700 - -
Vvi5g1098 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 234 IPR002885 -
Vvi5g1098 718 SUPERFAMILY HCP-like 388 553 - -
Vvi5g1098 718 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 623 700 - -
Vvi5g1098 718 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 17 609 - -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 636 665 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 344 378 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 458 486 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 272 300 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 201 236 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 416 444 IPR002885 -
Vvi5g1098 718 TIGRFAM PPR: pentatricopeptide repeat domain 381 413 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1098 - - - vvi:100246273 1383.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1098 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012595 0 1 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 0 0 1 6 1 1 28