Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1101 ATGTCCCTAGGAATAAAACCAAAGGTGAGAAAAACTCCGTACAACTACAACAAAGCATTCGGGAAGCTTGCAATAGTGGCTCTAGTGTTGGCATCTTTGGCCAGCAGCAATGCCCAGACCATATGCAACATGTCCGGGGAGGGTCTGATGGCATGCAAGCCAGCGGTTTCTCCTCCAAACCCTGCTCCACCTTCGGCCGCGTGCTGCTCAGCGCTTTCCCACGCCGATATGCACTGCCTCTGCTCCTACCGAAACTCCAAACTGCTGCCTTCCATGGGAATTGACCCCAACCTTGCATTGCAACTTCCAAAAAAGTGCAAATTCCCTAATGCTGCCCACTGCTAG 345 52.17 MSLGIKPKVRKTPYNYNKAFGKLAIVALVLASLASSNAQTICNMSGEGLMACKPAVSPPNPAPPSAACCSALSHADMHCLCSYRNSKLLPSMGIDPNLALQLPKKCKFPNAAHC* 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20086118 20089205 - Vvi5g1101 Vvi5g1101 787243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1101 114 Pfam Probable lipid transfer 28 113 IPR016140 -
Vvi5g1101 114 Gene3D - 38 114 IPR036312 -
Vvi5g1101 114 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 17 114 - -
Vvi5g1101 114 PANTHER LIPID BINDING PROTEIN-RELATED 17 114 IPR039265 GO:0005504|GO:0009627
Vvi5g1101 114 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 42 111 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1101 - - - vvi:100244617 159.844
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1101 . . . . . . . . . . . . . . Sed02g1054 . . Bhi01g02616 Tan10g1226 Cmetu01g1559 . Hepe05g1286 . Lcy11g1244 . . . . . . . . . . . . . . Cme07g01844 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01589 Cam07g1685 Cec07g1782 Cco07g1743 Clacu07g1669 Cmu07g1636 Cre07g2010 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002990 1 1 0 1 2 1 3 1 2 1 2 1 3 2 2 4 1 2 4 2 1 1 2 0 1 2 2 2 2 1 50