Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1110 ATGTCCAAAGGGCCCAAAGCCATCATGCTCATCATCAGACCTCCCTGCCTCTTCGCTCCGTCACCTCTGCTTCGAATCCTATTATTATTACCATTATTACTCATCATCTCCATCACTATTACGACTCCTGTTTCTGCAAATCACGGCTTTTTCAGTCTCAAGTACAAATTCGCAGGCCAGAAACGGTCTCTCGCCGCCCTCAAAGCTCACGACAACAGCCGCCAGCTTCGGATTCTTGCTGGCGTCGACCTCCCCCTCGGCGGCACCGGCCGTCCCGAAGCCGTCGGGCTTTACTATGCTAAAATTGGGATTGGAACACCGGCAAGGGACTACTATGTACAAGTAGATACAGGAAGTGACATTATGTGGGTTAATTGTATTCAGTGCAATGAATGTCCCAAGAAAAGCTCTCTTGGTATGGAACTCACATTATATGATATAAAGGAGTCACTCACTGGAAAATTGGTTTCTTGTGATCAAGATTTTTGCTATGCAATCAATGGTGGCCCTCCATCTTATTGCATAGCTAATATGTCCTGTTCTTATACTGAGATATATGCAGATGGGAGCTCCTCTTTTGGATACTTTGTAAGGGATATTGTACAGTATGATCAGGTATCTGGAGATCTCGAAACTACATCGGCAAATGGCAGTGTTATATTTGGGTGTAGTGCTACACAATCTGGGGATTTAAGTTCTGAGGAAGCTCTTGATGGGATACTTGGTTTTGGGAAGTCAAATACGTCTATGATTTCACAATTAGCTTCTTCTGGAAAAGTGAGAAAGATGTTTGCACACTGCTTAGATGGTTTAAATGGAGGTGGGATCTTTGCTATTGGGCATATTGTGCAGCCAAAAGTTAACACAACTCCATTGGTACCAAACCAGACACATTACAATGTCAATATGAAGGCAGTTGAAGTTGGTGGTTATTTTCTAAATCTTCCAACAGATGTATTTGATGTGGGAGACAAGAAAGGAACAATCATTGATAGTGGTACAACCTTGGCTTATCTCCCAGAGGTGGTTTATGATCAGTTATTGAGTAAGATATTTTCTTGGCAGTCTGATTTGAAAGTACATACCATTCATGACCAGTTTACGTGCTTTCAGTACTCTGAAAGTTTGGATGATGGATTTCCGGCTGTCACTTTTCATTTTGAAAATTCACTTTACTTGAAGGTTCATCCCCATGAATATCTATTCTCATATGATGGTTTATGGTGCATTGGTTGGCAAAACAGTGGGATGCAATCCAGGGATAGAAGGAATATCACCCTTTTAGGAGATTTAGCACTTTCAAATAAGCTAGTCTTGTATGATCTAGAAAATCAGGTCATTGGATGGACCGAATATAACTGTAAGTATCATGTAATTTTTTCTTCATTTTTAAGAAAATGTTTTTGGCTGGTTTTGAAGTTTTTCGTAATGTAG 1434 40.86 MSKGPKAIMLIIRPPCLFAPSPLLRILLLLPLLLIISITITTPVSANHGFFSLKYKFAGQKRSLAALKAHDNSRQLRILAGVDLPLGGTGRPEAVGLYYAKIGIGTPARDYYVQVDTGSDIMWVNCIQCNECPKKSSLGMELTLYDIKESLTGKLVSCDQDFCYAINGGPPSYCIANMSCSYTEIYADGSSSFGYFVRDIVQYDQVSGDLETTSANGSVIFGCSATQSGDLSSEEALDGILGFGKSNTSMISQLASSGKVRKMFAHCLDGLNGGGIFAIGHIVQPKVNTTPLVPNQTHYNVNMKAVEVGGYFLNLPTDVFDVGDKKGTIIDSGTTLAYLPEVVYDQLLSKIFSWQSDLKVHTIHDQFTCFQYSESLDDGFPAVTFHFENSLYLKVHPHEYLFSYDGLWCIGWQNSGMQSRDRRNITLLGDLALSNKLVLYDLENQVIGWTEYNCKYHVIFSSFLRKCFWLVLKFFVM* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20228611 20244419 - Vvi5g1110 Vvi5g1110 787252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1110 477 Gene3D Acid Proteases 88 281 IPR021109 -
Vvi5g1110 477 Gene3D Acid Proteases 282 459 IPR021109 -
Vvi5g1110 477 CDD pepsin_A_like_plant 98 454 IPR034161 -
Vvi5g1110 477 Pfam Xylanase inhibitor C-terminal 298 450 IPR032799 -
Vvi5g1110 477 SUPERFAMILY Acid proteases 94 454 IPR021109 -
Vvi5g1110 477 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 28 463 - -
Vvi5g1110 477 Pfam Xylanase inhibitor N-terminal 98 280 IPR032861 -
Vvi5g1110 477 ProSiteProfiles Peptidase family A1 domain profile. 98 450 IPR033121 -
Vvi5g1110 477 PRINTS Pepsin (A1) aspartic protease family signature 104 124 IPR001461 GO:0004190|GO:0006508
Vvi5g1110 477 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Vvi5g1110 477 PRINTS Pepsin (A1) aspartic protease family signature 426 441 IPR001461 GO:0004190|GO:0006508
Vvi5g1110 477 PANTHER ASPARTYL PROTEASES 28 463 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1110 - - - vvi:100261738 899.042
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008412 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 0 1 1 1 2 4 1 35