Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1112 ATGGCGGAGTTACCTCTTCACATCATCGAGAACATACTCTTGAGATTACCAGTCAAGTCTCTGATCCGTTCCAGGTGCGTCTGCAAAGCTTGGCGCACATTAATTTCCCATCCCCATTTCGTTAAAAGTCACCTCCGACTACCACAAACCCAAGCTAGAACTCAGTTTTGTACCCTAAACTATGGCGAACCTGGGGACAATTACTATCTGGTAGTTGGAGCCTCTACCAAAGACTGCGAAGCATTTAGCGATGATAACGGTGGGGCATTAGCTTTTGATTATTTATTTGATATTGGAGGATTTAAATACGAAGTCGTTCTTCTGGATTCCTGTGATGGGTTGTTGTGTTTAGTTGATTTGGCAAATAAAATTGTCTTATGGAACCCATCTACCAGACAATGCAATCAATTACCACCAAATCCTAACGTTCTGGATTTTCTTGGTTGCCATGGATTTGGGTATGACTCCTTTGCCGATGACTACAAGGTATTTCTTGTTTCTATGCTCAATCCTAACTTTGAGACTGTGGTGGATGTTTTCTCGCTGAAATCCAATAAATGGAAAAGAATTCAGGAAAAACATCATACTAGGGCTGCGCGCATGTGTGCAACTGTTTTACATGGGGCACTCCATTGGGTAGCTTATGATCCTATTCTGGGCTTTGATACAATCATGGCTTTTGATTTTGAAAAGGAGCGGTTCCGGGAGATGGCAATTCCGAGAGAAGAAGAAGAACTATATGTAAAGTTGAGGGTTGTAGGAGGATGCCTTTGTGTACATGGTTCTAAAGATCCAAGCAAGATGTGGGTTATGAAAGAGTATGGTGTTGACACATCTTGGAGTAAGATGGCTTCCCCATATAACAGTCTTAGGAATAACTTGAATGAAGAATTCAGGTGTGAGTTGTTACACACTCTGAATAATGAACATATGTTGCTGGTCAACAAGGAAAAACTAATGTTGTGTGATCAGAAAGAAAACACATACAAGAACATTATGCCTTACGGAAGGTGGTTCCGACATGATGCCAACTTATACGTGGAGACTCTTGTTTCACCTCATCCATCACTTTAA 1074 41.25 MAELPLHIIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHLRLPQTQARTQFCTLNYGEPGDNYYLVVGASTKDCEAFSDDNGGALAFDYLFDIGGFKYEVVLLDSCDGLLCLVDLANKIVLWNPSTRQCNQLPPNPNVLDFLGCHGFGYDSFADDYKVFLVSMLNPNFETVVDVFSLKSNKWKRIQEKHHTRAARMCATVLHGALHWVAYDPILGFDTIMAFDFEKERFREMAIPREEEELYVKLRVVGGCLCVHGSKDPSKMWVMKEYGVDTSWSKMASPYNSLRNNLNEEFRCELLHTLNNEHMLLVNKEKLMLCDQKENTYKNIMPYGRWFRHDANLYVETLVSPHPSL* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20260088 20261162 + Vvi5g1112 Vvi5g1112 787254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1112 357 SMART fbox_2 4 44 IPR001810 GO:0005515
Vvi5g1112 357 Gene3D - 1 43 - -
Vvi5g1112 357 ProSiteProfiles F-box domain profile. 1 44 IPR001810 GO:0005515
Vvi5g1112 357 PANTHER OS09G0372900 PROTEIN-RELATED 4 328 - -
Vvi5g1112 357 SUPERFAMILY F-box domain 2 50 IPR036047 GO:0005515
Vvi5g1112 357 TIGRFAM F_box_assoc_1: F-box protein interaction domain 109 317 IPR017451 -
Vvi5g1112 357 Pfam F-box domain 3 40 IPR001810 GO:0005515
Vvi5g1112 357 PANTHER AND ASSOCIATED INTERACTION DOMAINS-CONTAINING PROTEIN, PUTATIVE ISOFORM 1-RELATED 4 328 - -
Vvi5g1112 357 SUPERFAMILY Galactose oxidase, central domain 66 262 IPR011043 -
Vvi5g1112 357 Pfam F-box associated 206 331 IPR006527 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1112 - - - vvi:104879416 752.666
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010552 1 2 1 1 0 1 0 1 1 1 1 1 0 1 1 0 1 3 0 1 1 0 1 1 1 1 1 1 1 2 28