Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1117 ATGGAGGATTCGTCCACACCCATGCTCCTCCTCACTTTCACTTGCCTCTGTCTTTCTCTCTCGGCCAACACCACCACCGCAGATGAAGCCGCCTTCATGACCAAGCTGGCCGCTGCCCTCTCCCCAACCCCGTCTGGCTGGTCCGGCACCAACCACTGCAAATGGTCCGGAGTCAAGTGCGACGCCATCGGCCAAGTCATCTCCATCAATCTTGCTTCCAGGTCGCTTTCGGGCATGTTGCCTTCGGACATAAATCAGCTTCCCCAGCTGCAGGCACTGTCTCTCCAAAAGAATCAGCTCTCGGGCCCCCTACCATCTCTCTCAAACCTCACGTCTCTCCAGAGCGTCTTTCTCGATAACAACAACTTCTCTTCCGTTCCGCCTGAGTTCCTCCTAGGCCTCAACAGCTTACAAACGTTTAGCATCAGCGAGAACCCTAGCCTGCAGCCCTGGAGAATCCCAGAACATCTTTCTGAATCCACAAGCCTGGCCTCCTTGTTGGCAAGCAATGCTAATATTTTTGGTACAATTCCAGAAATATTTGGATCATTCCCCAATTTACAATCCGTGAGGCTTTCTTACAACAATCTTACCGGCCCTCTGCCGCCTTCGTTTGGTGGCTCTGGGATCCAGAACTTGTGGCTCAATAATCAAAAAGTAGGGCTTTCGGGCAGGCTCGATGTGCTTGGAGCAATGGTGCAGCTGTCACAGGCTTGGCTCCATGCTAACGCCTTTTCGGGTCCCATCCCTGATCTTTCCAACAGCAGTGCCATTTTTGATCTACAACTTCGCGATAATCAGCTCACGGGTGTTCTTCTTCCTTCATTATTTTCCCATCCTAGGCTCGTTAATATATCTTTGCAGAACAATAAGTTGCAAGGGCCATATCCTAATTTTTCCAAAACCGTGGAGGTTACATTAGGATCGACCAACAACTTTTGTAACCCACAACCAGGTCCATGCGATCCTCAGGTCACTGCACTGCTTGAGGTGGCCAAAGCCTTGGGATACCCGATGATATTGGCTCAATCTTGGGAAGGAAATGATGCTTGTAAGGGATGGAGTTTTATTTCATGTGATGCGCAAGGAAAAAATGTGACTATAGTTAATTTTGGGAAGCAAGAGTGGAGTGGGTCGATTTCACCTGCCTTTGCCAATCTTACCTCACTGAGGAATTTGCTTTTAAATGACAATGACCTCAGTGGTACATTGCCAGCTAGCTTGACAAGCCTTAAAGAGCTTCGCATTTTGGACATCTCCAATAATAACCTTTCTGGGAGTTTACCACATTTTCCATCAACAGTTTCTGTCAAAGCCCAAGGTAATAACCTTCTTGGCACCAATTCAACCTCTGCAGGTGACGGAGGGGCGTCGGGATCAGGAAGTCCTGCTTCTAATTCAGATTCTACACCAACTACAACCCCATCCAAAGCCACAAGCTCTTCTTCCTCTCCGGGGTTCCTTGTTAGTGTTATTGTTGGTTCCGCTGTTTTCATGGGCATTGTGTCATTAGTAATTTATGGTCTGTATGCCAAAAGACGCCATAGGAAATTAGTAATGTCGAAAAGATCGCTGAAGGGGAAGGGAAGTGTAAGGAGTTTGATAACGGGTAAAGCAAATGGCAATGGTACTAGTGGATCTGATTCGCACAATCAAAGCAGTTCTAGCGGCGATATGCATGTTTATGATGGTGGCAATGTTGCTATTCCAATAGAGGTTCTACGGCAAGGGCTGAGCGAGTTTCAGGCGGAAATCGGGGTTCTCACAAAAGTTAGGCACAGGCATTTAGTTGCACTACTTGGTTTTTGCATCAATGGCAATGAGAGGCTGCTGGTCTATGAGTATATGCCGCAAGGGACTTTAGGGCAGCACTTGTTTGAATACAATGAGACCGGGTTCTCTCCTCTTACTTGGAAGCAAAGGATTACAATTGCGTTGGACGTGGCCAAAGGGATGGAATATTTGCACAGCTTGGCACAGCAGAGTTTTATTCACCGCGATTTGAAACCATCTAATATCCTTCTTGGAACTGACATGAGAGCCAAGGTTTCTGATTTTGGTTTGGTTAAGAATGCGCCTGATGGGAAGTACTCGGTCGAGACACGGTTGGCTGGGACATTTGGATACCTTGCACCTGAATATGCTGCTACGGGAAGAGTGACGATAAAGGTGGATGTTTTTGCATTTGGGGTGGTCTTGATGGAGATGATCACGGGTAGAAAGTCACTAGATGAAGCCTTGCCAGAGGAGAAGTCACATCTGGTTAGTTGGTTCCGGAGAGTCCTCCCTAACCCAGACAACATCAGAGATGCCTTGGATCCCTCCCTACACCCTGATGAAGAAACCTTTAGAAGCATCTGCGAAGTAGCAGAACTAGCGGGACACTGCACAGCTCGTGAGCCACACCAGAGACCAGACATGAGCCATGCAGTTAATGTTTTATCGCACCTTTTAGACGAATGGAAACCTTCAGCTGATGATGAAGAAAATGATAACTTTGGCATTGATGACTTCAACTTGAGCCTTCCTCAAGCCTTGGAGAGATGGCAAGCTAATGAAGGGACTTCCAGTATGACCCTTAATCTCTATAACAGTGGAGCACAGAGCATATCAAAAAAGCGTTCAGCGTCTCATTCATTGGATCAGCAATGA 2652 47.4 MEDSSTPMLLLTFTCLCLSLSANTTTADEAAFMTKLAAALSPTPSGWSGTNHCKWSGVKCDAIGQVISINLASRSLSGMLPSDINQLPQLQALSLQKNQLSGPLPSLSNLTSLQSVFLDNNNFSSVPPEFLLGLNSLQTFSISENPSLQPWRIPEHLSESTSLASLLASNANIFGTIPEIFGSFPNLQSVRLSYNNLTGPLPPSFGGSGIQNLWLNNQKVGLSGRLDVLGAMVQLSQAWLHANAFSGPIPDLSNSSAIFDLQLRDNQLTGVLLPSLFSHPRLVNISLQNNKLQGPYPNFSKTVEVTLGSTNNFCNPQPGPCDPQVTALLEVAKALGYPMILAQSWEGNDACKGWSFISCDAQGKNVTIVNFGKQEWSGSISPAFANLTSLRNLLLNDNDLSGTLPASLTSLKELRILDISNNNLSGSLPHFPSTVSVKAQGNNLLGTNSTSAGDGGASGSGSPASNSDSTPTTTPSKATSSSSSPGFLVSVIVGSAVFMGIVSLVIYGLYAKRRHRKLVMSKRSLKGKGSVRSLITGKANGNGTSGSDSHNQSSSSGDMHVYDGGNVAIPIEVLRQGLSEFQAEIGVLTKVRHRHLVALLGFCINGNERLLVYEYMPQGTLGQHLFEYNETGFSPLTWKQRITIALDVAKGMEYLHSLAQQSFIHRDLKPSNILLGTDMRAKVSDFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTIKVDVFAFGVVLMEMITGRKSLDEALPEEKSHLVSWFRRVLPNPDNIRDALDPSLHPDEETFRSICEVAELAGHCTAREPHQRPDMSHAVNVLSHLLDEWKPSADDEENDNFGIDDFNLSLPQALERWQANEGTSSMTLNLYNSGAQSISKKRSASHSLDQQ* 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20325548 20328541 - Vvi5g1117 Vvi5g1117 787259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1117 883 Gene3D Ribonuclease Inhibitor 323 449 IPR032675 -
Vvi5g1117 883 SUPERFAMILY Protein kinase-like (PK-like) 574 827 IPR011009 -
Vvi5g1117 883 Gene3D Transferase(Phosphotransferase) domain 1 617 839 - -
Vvi5g1117 883 ProSiteProfiles Protein kinase domain profile. 534 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1117 883 SMART LRR_typ_2 110 133 IPR003591 -
Vvi5g1117 883 SMART LRR_typ_2 387 410 IPR003591 -
Vvi5g1117 883 SMART LRR_typ_2 184 207 IPR003591 -
Vvi5g1117 883 SMART LRR_typ_2 411 433 IPR003591 -
Vvi5g1117 883 MobiDBLite consensus disorder prediction 535 557 - -
Vvi5g1117 883 MobiDBLite consensus disorder prediction 442 484 - -
Vvi5g1117 883 PANTHER OSJNBA0070M12.3 PROTEIN 577 875 - -
Vvi5g1117 883 PANTHER OSJNBA0070M12.3 PROTEIN 20 576 - -
Vvi5g1117 883 SUPERFAMILY L domain-like 50 301 - -
Vvi5g1117 883 Gene3D Phosphorylase Kinase; domain 1 559 616 - -
Vvi5g1117 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Vvi5g1117 883 Pfam Protein tyrosine and serine/threonine kinase 578 812 IPR001245 GO:0004672|GO:0006468
Vvi5g1117 883 SMART serkin_6 487 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1117 883 SUPERFAMILY L domain-like 324 432 - -
Vvi5g1117 883 Pfam Leucine rich repeat N-terminal domain 322 360 IPR013210 -
Vvi5g1117 883 Pfam Leucine rich repeat N-terminal domain 29 61 IPR013210 -
Vvi5g1117 883 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 20 576 - -
Vvi5g1117 883 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 577 875 - -
Vvi5g1117 883 MobiDBLite consensus disorder prediction 531 557 - -
Vvi5g1117 883 Gene3D Ribonuclease Inhibitor 27 318 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1117 - - - vvi:100253795 1614.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004008 3 1 2 2 2 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 2 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76646 PF07714 PK_Tyr_Ser-Thr 7.80E-40 CL0016 Vvi PK