Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1118 ATGACGTACATACCAGAGGTGATTATGGTGGACATTCTGTCGAGACTACCAGTGAAGTCTCTGCTACGATTCAGGTGCGTATGCAAAGCCTGGTGCACCTTAATCTCCCATCCCCAATTCGTTGAAACCCACCTCCGTCAACAACATAAACGCCCCGTAATTGGACTCGTTGTTCCACACTCCGTGGACGACCCTCTACATAAGGATGATTTAGCAGTGGATCTTGAACTTCACTTGGGTATCCCAAACAAACGCACTACAACAGTTCTGGATTCTTGTAATGGGTTGCTGTGTGTGGTTGATTGCTATTATGGGTTTTATTCCCTCAAGCCCCCTCAAAAACTCATCCTTTGGAACCCATCTACCAGACAGTGCAACCATATTCCATGCCCTAGTTTTGTTGGTTACCAGAACTGTATGTATAGCTTTTTCTATGATCCTGGTAGTGATGACTACAAGATTGTAAGGATTTTCACCTTTCTTGGTAAGGACAAAACCGGAATCGATATTTTCACGCTGAAAACTAACAAGTGGAGAAGAGTTGAGGAGACCCATTCAAGTGTAATTGGATATTGGTCCGCAACTTATTTTAACGGGAATCTCCATTGGCTAGCGTTCAGGTATGGAGGGTATGGAGAAGATGAACGTAGTTCAATGGTTGCTTTTAGTCTCAGAGAGGAGAAGTTCCAGGAGATGGAATTGCCAAGTCAACGTGCTGTCTTTGGTTTGAGGGTTTTAGGAGGATGCCTCTGCGTGGATGGTTTATATACTAATGACAAGTGGGTGATGGAAGAATATGGCATCAAGGAGTCTTGGAAAAGCTTAATTGCTATCCCATATAGGGTTGGAGATGGTTCAAGTTGGAAACTTCCCCGTGTGTTGCGTTTTTTGGAGAATGGTGTGCTTCTGGTGCTTCATGACGGGAAGTTTCGCAACACAAACTCAGCAGGCGGTATGTATAGGCCCAGTTCATATTCTAGTTCAGGAGGATATGGTGACCGTTATGATGATGATCGATATGAAGGCCGCTATGGAAGAGACGAAGATCGAAATGGTTATGGGAGAGAAAGAGAATGGGGCAGCAGAGATGATGACCGGTATGGTAGAAATGGGGACTCATATGGTCCTGAAGGGGATCGCTATGGCAGAGATTCTGATGAACGGTATGGTAGAGATGGCTATAAGGATGATGATTACAGGGGAAGAAGTCGAAGGAATGAGGACTACCAGTATGGCTCTAGAAGTAGGAGTGCTGATAGAGATAGGGACCGTGCTTTTGATGAGGAGAGCAACCATTCATCTAGAGGTGGTGCCCGAACTAATGAGCATCCTCAGTATGGAAGGCAGCTTGAACGAAAATTTTCTGAACAAAATCTTGATGCTCCTCCTAGTTATGAAGAAGCTGTAGCTGATGCCCACAGTCCTGTTCATGATGAGAGGGATGGAGCAACCCCAGCAGCACCTGCCCCTAAAACATCTTCTCCACCTGTAAGCACTAGTCCTAGCCAAGCAACAACTGCTGTTGGTCCTTCTACATCTCCTCCTGCCAACAAGGAAGTTGATGCTTTTGATGAATTTGATCCGCGCGGTCCAGTTTCAGCTGTCCCAGCTACATCAATTAGTCCGGAAATGGACTTACTTGGCTCTCTGTCAGAGTCATTTTCTTCAAATTCATTGGCTCTTGTGCCATCTGGACCTGCAACCACAACATCTGAGGCTGCTGTCCTTGGAAATGCTGGGTCTGCACCCGCATCAGCAGCAATGCCATCTGGATCTGCTGTTATGAGCCAGTCTTTTGAAGACCCATTTGGTGACTCCCCTTTTAGAGCTTTGCCTTCAGCAGAGAGTGTACCAGCTCAACCTCAGGATTCAGCTTCCACAACTTCCTTCCAGACCATGAATCAAACATCAGGACCACCCTTCCCAGTTAACCCAAGGAGTGGACACGGACACTGCCTGACGAGAATCAGTTCGTGCTACGATAACAATGTCAGAGCCAGTCTCTTTACGAGCATCAATGGCTGCTTTTATCCGCATCACTGCTTCCTCCCTAGACACCACTTTCCTACCACGTGTATGACCACAAGCTTTTGGAGACACCTTGATATAACATTATATCATAAGCAAGAGTTCTAA 2136 46.07 MTYIPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHLRQQHKRPVIGLVVPHSVDDPLHKDDLAVDLELHLGIPNKRTTTVLDSCNGLLCVVDCYYGFYSLKPPQKLILWNPSTRQCNHIPCPSFVGYQNCMYSFFYDPGSDDYKIVRIFTFLGKDKTGIDIFTLKTNKWRRVEETHSSVIGYWSATYFNGNLHWLAFRYGGYGEDERSSMVAFSLREEKFQEMELPSQRAVFGLRVLGGCLCVDGLYTNDKWVMEEYGIKESWKSLIAIPYRVGDGSSWKLPRVLRFLENGVLLVLHDGKFRNTNSAGGMYRPSSYSSSGGYGDRYDDDRYEGRYGRDEDRNGYGREREWGSRDDDRYGRNGDSYGPEGDRYGRDSDERYGRDGYKDDDYRGRSRRNEDYQYGSRSRSADRDRDRAFDEESNHSSRGGARTNEHPQYGRQLERKFSEQNLDAPPSYEEAVADAHSPVHDERDGATPAAPAPKTSSPPVSTSPSQATTAVGPSTSPPANKEVDAFDEFDPRGPVSAVPATSISPEMDLLGSLSESFSSNSLALVPSGPATTTSEAAVLGNAGSAPASAAMPSGSAVMSQSFEDPFGDSPFRALPSAESVPAQPQDSASTTSFQTMNQTSGPPFPVNPRSGHGHCLTRISSCYDNNVRASLFTSINGCFYPHHCFLPRHHFPTTCMTTSFWRHLDITLYHKQEF* 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20344507 20353316 - Vvi5g1118 Vvi5g1118 787260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1118 711 SMART fbox_2 4 44 IPR001810 GO:0005515
Vvi5g1118 711 MobiDBLite consensus disorder prediction 496 513 - -
Vvi5g1118 711 MobiDBLite consensus disorder prediction 332 436 - -
Vvi5g1118 711 SUPERFAMILY Galactose oxidase, central domain 86 263 IPR011043 -
Vvi5g1118 711 MobiDBLite consensus disorder prediction 605 646 - -
Vvi5g1118 711 Pfam F-box-like 2 39 IPR001810 GO:0005515
Vvi5g1118 711 TIGRFAM F_box_assoc_1: F-box protein interaction domain 92 280 IPR017451 -
Vvi5g1118 711 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 309 646 - -
Vvi5g1118 711 MobiDBLite consensus disorder prediction 316 330 - -
Vvi5g1118 711 PANTHER EPSIN/ENT-RELATED 309 646 - -
Vvi5g1118 711 MobiDBLite consensus disorder prediction 316 537 - -
Vvi5g1118 711 Gene3D - 1 43 - -
Vvi5g1118 711 SUPERFAMILY F-box domain 1 98 IPR036047 GO:0005515
Vvi5g1118 711 ProSiteProfiles F-box domain profile. 1 48 IPR001810 GO:0005515
Vvi5g1118 711 MobiDBLite consensus disorder prediction 617 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1118 K12471 EPN; epsin - vri:117914018 643.654
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53