Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1120 ATGAAGAAGGCCATTGGTCAAACTGTTAGGGACCTTAAGAGAGAGGTGAATAAGAAAGTTCTTAAAGTTCCAGGAATAGAACAGAAGGTTCTGGATGCTACTAGCAATGAGCCTTGGGGTCCTCATGGAACACATCTTGCAGATATTGCACAGGCTACCAGAAACTATCACGAGTACCAAATGATCATGTCAGTAATCTGGAAGCGGATTAATGATACAGGAAAGAATTGGCGGCATGTCTACAAGGCTTTGACAGTTCTGGAATACTTGGTAGGCCATGGTTCTGAGCGTGTCATAGATGAGATTCGGGAGCATATATACCAAATATCAACTTTGTCAGACTTTCAATATATTGATTCAAGTGGGAGGGATCAGGGAAGCAATGTCAGAAAGAAATCTCAAAGTCTCGTGGCTCTGGTGAATGATAAAGAAAGGATACAGGAAGTTAGACAGAAGGCTGCTGCCAACAGGGACAAGTTTCGCAACACAAACTCAGCAGGCGGTATGTATAGGCCCAGTTCATATTCTAGTTCAGGAGGATATGGTGACCGTTATGATGATGATCGATATGAAGGCCGCTATGGGAGAGACGAAGATCGAAATGGTTATGGGAGAGAAAGAGAATGGGGCAGCAGAGATGATGACCGGTATGGTAGAAATGGGGACTCATATGGTCCTGAAGGGGATCGCTATGGCAGAGATTCTGATGAACGGTATGGTAGAGATGGCTATAAGGATGATGATTACAGGGGAAGAAGTCGAAGCAATGAGGACTACCAGTATGGCTCTAGAAGTAGGAGTGCTGATAGAGATAGGGACCGTGCTTTTGATGAGGAGAGCAACCATTCATCTAGAGGTGGTGCCCGAACTGATGAGCATCCTCAGTATGGAAGGCAGCTTGAACGAAAATTTTCTGAACAAAATCTTGATGCTCCTCCTAGTTATGAAGAAGCTGTAGCTGATGCCCACAGTCCTGTTCATGATGAGAGGGATGGAGCAACCCCAGCAGCACCTGCCCCTAAAACATCTTCTCCACCTGTAAGCACTAGTCCTAGCCAAGCAACAACTGCTGTTGGTCCTTCTACATCTCCTCCTGCCAACAAGGAAGTTGATGCTTTTGATGAATTTGATCCGCGCGGTCCAGTCTCAGCTGTCCCAGCTACATCAATTAGTCCGGAAATGGACTTACTTGGCTCTCTGTCAGAGTCATTTTCTTCAAATTCATTGGCTCTTGTGCCATCTGGACCTGCAACCACAACATCTGAGGCTGCTGTCCTTGGAAATGCTGGGTCTGCACCCGCATCAGCAGCAATGCCATCTGGATCTGCTGTTATGAGCCAGTCTTTTGAAGACCCATTTGGTGACTCCCCTTTTAGAGCTTTGCCTTCAGCAGAGAGTGTACCAGCTGAACCTCAGGATTCAGCTTCCACAACTTCCTTCCAGACCATGAATCAAACATCAGGACCACCCTTCCCAGTTACCCAAGGAGTGGACACGGGTTCCAACTTTGACTTTGGGGACACTTTCCCTGGCATAACTTACACGCCATCCGGTGTCTCCACTGCACAACCTCCTTCTGCAAGCCCACAATTTTCACCCCAAGAGCAATGGATTCCCCAGCAGAACAATGATATCCTAGCAGACATTCTACCACCTTCAGGATCTTCAGCTCCTGCCATTTCACAGGCTGCTTTCCCAGCTCCAACTGGCCAGTCTGTGCAGCCAAACCCTAATGTTGTTGGGGGCTTTCTTGCACACGCCTGTACCTTCACAGCTCCTTTTCAATCACCAAGTGGGCCAGTTACACATCCTAGCAATGATAACCTTGGTGGCTTATTTCCACAAGCTGGACCGCCTGGTTCAGTGATGTCACAGTCTACTCCCCCTGCTTCAACAGGTTCACTTGCTATAGTTCCTCAAGCATCCAAGGACAAGTTTGAAACGAAGTCAACGGTTTGGGCTGATACACTGAGCAGAGGATTAGTCAATTTGAATATATCTGGAGCTAAAATTAATCCATTGGCGGATATTGGAATTGATTTTGATGCCATTAATCGGAAAGAAAAGAGGATGGAGAAACCTAAGCCTGCTACCACAGCTCCTGTATCTACTACTACAATGGGCAAGGCAATGGGATCTGGCTCTGGAATGGGTCGTGCTGGTGCAGGTGCACTCAGGCCTCCACCAAATACTATGATGGGTTCAGGTATGGGAATGGGCATGGGCATGGGAGGATATGGAGGCATGAATCAACCTATGGGCATGGGTATGAATGTGGGCATGGGCATGAATATGGGAATGGGGCAAGGAGCCCAGATGCAACAACCAACTGGATTGCCTCCTGGGGGTTATAACCCCATGATGGGCTCAGGTGGTTATGCTCCTCAGCAACCATATGGTGGTGGCTACCGATGA 2415 47.62 MKKAIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGTHLADIAQATRNYHEYQMIMSVIWKRINDTGKNWRHVYKALTVLEYLVGHGSERVIDEIREHIYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIQEVRQKAAANRDKFRNTNSAGGMYRPSSYSSSGGYGDRYDDDRYEGRYGRDEDRNGYGREREWGSRDDDRYGRNGDSYGPEGDRYGRDSDERYGRDGYKDDDYRGRSRSNEDYQYGSRSRSADRDRDRAFDEESNHSSRGGARTDEHPQYGRQLERKFSEQNLDAPPSYEEAVADAHSPVHDERDGATPAAPAPKTSSPPVSTSPSQATTAVGPSTSPPANKEVDAFDEFDPRGPVSAVPATSISPEMDLLGSLSESFSSNSLALVPSGPATTTSEAAVLGNAGSAPASAAMPSGSAVMSQSFEDPFGDSPFRALPSAESVPAEPQDSASTTSFQTMNQTSGPPFPVTQGVDTGSNFDFGDTFPGITYTPSGVSTAQPPSASPQFSPQEQWIPQQNNDILADILPPSGSSAPAISQAAFPAPTGQSVQPNPNVVGGFLAHACTFTAPFQSPSGPVTHPSNDNLGGLFPQAGPPGSVMSQSTPPASTGSLAIVPQASKDKFETKSTVWADTLSRGLVNLNISGAKINPLADIGIDFDAINRKEKRMEKPKPATTAPVSTTTMGKAMGSGSGMGRAGAGALRPPPNTMMGSGMGMGMGMGGYGGMNQPMGMGMNVGMGMNMGMGQGAQMQQPTGLPPGGYNPMMGSGGYAPQQPYGGGYR* 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20411466 20425543 - Vvi5g1120 Vvi5g1120 787262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1120 804 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 158 180 - -
Vvi5g1120 804 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 1 790 - -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 431 495 - -
Vvi5g1120 804 CDD ENTH 26 142 - -
Vvi5g1120 804 Gene3D - 23 164 IPR008942 -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 150 387 - -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 469 495 - -
Vvi5g1120 804 Pfam ENTH domain 26 146 IPR013809 -
Vvi5g1120 804 PANTHER EPSIN/ENT-RELATED 1 790 - -
Vvi5g1120 804 SMART enth_2 24 150 IPR013809 -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 690 719 - -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 509 533 - -
Vvi5g1120 804 SUPERFAMILY ENTH/VHS domain 7 150 IPR008942 -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 346 363 - -
Vvi5g1120 804 MobiDBLite consensus disorder prediction 182 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1120 K12471 EPN; epsin - vvi:100267012 1037.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53