Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1126 ATGATGAAGGAGTTCATGCAACAAGAGATTGATCACATGAAGGAAGAGAATTCGGAGAAGAGCCAGCAGTTTTGGAGGATAATGGAATTCCCTGAGCTCTCCTTGGCTCCATCCCCTCGTCACGGGGTTGACAAAAGCACCAATAGCTCATCTTCCGAATCGGAAGCCAATTACCCTTCTAAAAAGAGAAAGTTTTCAGATCATCTGTTCAATAGGAGTGACCCCATGATTCAAACTAGTGTTGATCTTCAACTCAAAGACCCCTTGCCATTGGATTGGGAGCAATGCCTTGATCTTGAATCAGGGAGAATGTATTATCTCAACAGAAAGACCTTGAGAAAGAGCTGGAACTGCCCAAAGGATCATAATCAGCAGAAGCTAGACCTTGAGCTCAACATCTCAACACTCTCAAATTGTCCTGAAAAATGCAGCAGCTTTGACTCCCAAAGGCTTCAAGATCACTCCAAGAAGCACCAACACTGCTCCTCAAGCAGCAACATGGTGGCTTTGGCATGCTTGAATTGCCATCTCTTAGTCATACTCTCCAAGTCCTCCCCATCTTGCCCCAACTGCAAGTATGTCCACTCCCTCCCTACCCAACAAATCCCAACCTCAAAAGCCCCTCCCATCAAGTCCTTGGACACCCTAAGCCTCTTGAATTAG 663 46.0 MMKEFMQQEIDHMKEENSEKSQQFWRIMEFPELSLAPSPRHGVDKSTNSSSSESEANYPSKKRKFSDHLFNRSDPMIQTSVDLQLKDPLPLDWEQCLDLESGRMYYLNRKTLRKSWNCPKDHNQQKLDLELNISTLSNCPEKCSSFDSQRLQDHSKKHQHCSSSSNMVALACLNCHLLVILSKSSPSCPNCKYVHSLPTQQIPTSKAPPIKSLDTLSLLN* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20506905 20508157 + Vvi5g1126 Vvi5g1126 787268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1126 220 MobiDBLite consensus disorder prediction 35 65 - -
Vvi5g1126 220 ProSiteProfiles WW/rsp5/WWP domain profile. 87 121 IPR001202 GO:0005515
Vvi5g1126 220 Coils Coil 3 23 - -
Vvi5g1126 220 Gene3D - 84 134 - -
Vvi5g1126 220 MobiDBLite consensus disorder prediction 1 21 - -
Vvi5g1126 220 MobiDBLite consensus disorder prediction 41 56 - -
Vvi5g1126 220 CDD WW 90 121 IPR001202 GO:0005515
Vvi5g1126 220 PANTHER BOMB/KIRA PROTEINS 28 220 - -
Vvi5g1126 220 PANTHER - 28 220 - -
Vvi5g1126 220 SUPERFAMILY WW domain 80 121 IPR036020 GO:0005515
Vvi5g1126 220 SMART ww_5 88 121 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1126 - - - vvi:100251518 438.343
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1126 . . . . . . . . . Cmo17g00565 . . . . . . . . . . . . . . Cla08g00418 Cam08g0856 Cec08g0432 Cco08g0542 Clacu08g0568 . Cre08g0392 . . . . . . . . . . . . . . . . . . . . Cma17g00581 . Car17g00539 Cpe12g00495 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012525 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 29