Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1129 ATGTGGACCCACACACTCTCATGGACTTTTCCTCAATCAGCATCTCCCTTTTTAACTCATTATTCTCTTTCCCTTTTTCTCCCTTTTCTTCTTTCCTTCTCCTCCTTCTCCTCCTCCTTCTTCTTCTTCTTCCATATCTTCCTCTCTCATAGTAAGTGTTTGATTTTCATCATGTATCCTTCTTCTGCTTCCTCCTCTTCTCACCGTTCACTGCATTCCTCCGGCCTTATTCGCTACGGTTCAGCTCCGGGCTCCCTCTTGACCTCCGCCGTCGATTCCCTCGTCTCAACTGACCGTGAATTCTCCCCCCTCGGATCTCACCATATCATGCCTCACCAGTACTTTTCCGGTGACTCTTCCTCCGAGTCCACCTGTAAGGTGGCTGCGCCGCCGGATCACAAGGAGGCCGGAGCCGGAGGCCCCGCTGCTATGTTGCAGAGGTCCTACGGGTTTAGTGAGATGCCTGTCGCCGGCTTCTCTACAGCTAGTAGTTTGAAAGGCGGTGGTGAAGGCGGCGGTGGCGGTGGATCTGCGCCGTCGTTGATTCGCCATAGCAGCTCCCCTGCTGGCTTCCTCAACCAGCTCACTGCCGATAACTTGACAAGGGGGACTGGAAACTATAGCTCTCAAGGTGGTTGTAATGGTGGTCATGGAATATCAAGGTTGAAGTCCCAGTTAAGCTTCAAGAGGCAAGATTCTCTTTCCCAGATCTCAGAAGTAAGTGAGAATATGGTTGATGGCATCAGCTCTGACAATGGCCACAGAAATGCCACTCATTCTTATGCCACTGCTAGTTTTCCTATGGATGCCTGGGACAATACCAACACCATTGTGTTTTCCACAACACCAAACAAACGAGCTAAGAACATCAATGGTGACATTCTCAACAGTCTCAGTTCCTTAGAGCCACAGTTTAGTCTGCCACAGACAAGTTTAGAGATGGCAGCAGTAGAGAAGCTGCTGCAAGTACCTGAAGACTCTGTTCCATGCAAAGTTCGAGCTAAGCGTGGCTGTGCCACTCATCCTAGAAGTATTGCTGAAAGGGAGAGAAGAACTAGAATAAGCGGGAAACTGAAGAAACTGCAAGATCTTGTTCCTAACATGGATAAGCAAACTAGCTATGCTGACATGTTGGACTTGGCTGTGCAACATATCAAAGGTCTTCAAAATGAAGTGCAGAAGCTCAATAAAGAACTGGAGAACTGTACTTGTGGTTGCAAGCAAGCCCTCTAA 1233 48.66 MWTHTLSWTFPQSASPFLTHYSLSLFLPFLLSFSSFSSSFFFFFHIFLSHSKCLIFIMYPSSASSSSHRSLHSSGLIRYGSAPGSLLTSAVDSLVSTDREFSPLGSHHIMPHQYFSGDSSSESTCKVAAPPDHKEAGAGGPAAMLQRSYGFSEMPVAGFSTASSLKGGGEGGGGGGSAPSLIRHSSSPAGFLNQLTADNLTRGTGNYSSQGGCNGGHGISRLKSQLSFKRQDSLSQISEVSENMVDGISSDNGHRNATHSYATASFPMDAWDNTNTIVFSTTPNKRAKNINGDILNSLSSLEPQFSLPQTSLEMAAVEKLLQVPEDSVPCKVRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQNEVQKLNKELENCTCGCKQAL* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20721905 20730141 - Vvi5g1129 Vvi5g1129 787271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1129 410 MobiDBLite consensus disorder prediction 162 184 - -
Vvi5g1129 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983
Vvi5g1129 410 PANTHER TRANSCRIPTION FACTOR BHLH129 75 403 - -
Vvi5g1129 410 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 403 - -
Vvi5g1129 410 SMART finulus 344 394 IPR011598 GO:0046983
Vvi5g1129 410 CDD bHLH_AtbHLH_like 343 395 IPR045239 -
Vvi5g1129 410 Gene3D - 339 408 IPR036638 GO:0046983
Vvi5g1129 410 Coils Coil 378 405 - -
Vvi5g1129 410 Pfam Helix-loop-helix DNA-binding domain 343 389 IPR011598 GO:0046983
Vvi5g1129 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 403 IPR036638 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14816 PF00010 HLH 6.80E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1129 - - vvi:100246361 680.248