Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g113 ATGAATCTGGGTAGCGGACAGGGATCCATGTCGACGGCGAGTTCTAGTGGTGCATGGAAGGCCGGAGATGTGGTCCCCGACCAGTTTCCGGCGGGTCTCCGGGTCCTGGTGGTTGATGATGATCCCACTTGTCTCATGATCTTGGAGAAGATGCTCCGGACTTGCCTTTATGAAGTTACTAAATGCAATCGAGCAGAAACAGCATTATCCCTGTTGCGAGGGAATAAAAGCGGGTTTGATATTGTTATAAGCGATGTACACATGCCCGACATGGACGGATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCATGATGTCTGCTGATGACGGAAAACATGTTGTGATGAAGGGTGTCACTCATGGTGCATGTGATTATTTGATTAAGCCTGTTCGAATTGAGGCGCTGAAGAACATATGGCAGCATGTGGTTAGGAAGAGGAAGAACGAGTGGAAGGATTTGGAGCAGTCCGGAAGTGTGGAAGATGGAGATCGCCAGCAAAAACCATCAGAAGACGTGGATTATTCGTCTTCAGCAAATGAAGGGAATTGGAAAAACTCGAAGAGGAGGAAAGATGAGGAAGATGATGCGGAGGAGAGGGATGATACTTCCACCCTGAAGAAGCCGCGGGTTGTCTGGTCGGTAGAGCTCCACCAACAGTTTGTGGCTGCTGTTAATCAACTGGGCATTGACAAGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGTTTGTATCTTAGGAGGCTAAGTGGTGTATCACAGCACCAGAATGGGCTCAATAACTCTTTCATGGGTCCCCAAGAAGCAACTTTTGGATCAATATCTTCACTTAATGGGCTTGATCTTCAGACTCTTGCTGTTGCGGGTCAACTCCCAGCACAAAGCCTCGCCACACTCCAAGCAGCAGGGCTTGGTAGGTCAACTGGTAAATCGGGACTACCTATGCCGCTTGTTGATCAAAGGAACCTCTTTAGTTTTGAAGCCCCTAAGTTCAGATATGGGGAAGGTCAGCAGCAACAGCAACAACTGAGCAATAGTAGTAAACAAATGAACTTACTACATGGAATCCCGACAACCATGGAGCCAAAGCAGCTTGCTACTTTGCGCCATTCTGCACAGGCGCAAATACTTAATGAAACTACTGAGGTTAGCTCAGAAATAAAAGGATCAAGAGGATTTGTTCCAAGTTATGATATTTTTAATGAGTTGCATCAGCCCAAATCTCAAGATTGGGAATTACAAAATGTAGGCTTGACGTTTAATGCCTCTCAACATGCAAACTCTATACCAGGAAACCTGGGAAGTGAGCATGGGAACACACACAACATCAGTCAACACCTCAACACGCTTGTTGACAGTTCATCAAGGGTCAAGACTGAAAAAATTCTTGATCCATGCTGTGAAATCACCCCCTTCCCTGAACACTATGTTCAGGAGGATCTCATGAGTGCACTTCTCAAACAGCAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCCATGGATAACATTCCCGTGTAA 1602 46.07 MNLGSGQGSMSTASSSGAWKAGDVVPDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRGNKSGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEDGDRQQKPSEDVDYSSSANEGNWKNSKRRKDEEDDAEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNGLNNSFMGPQEATFGSISSLNGLDLQTLAVAGQLPAQSLATLQAAGLGRSTGKSGLPMPLVDQRNLFSFEAPKFRYGEGQQQQQQLSNSSKQMNLLHGIPTTMEPKQLATLRHSAQAQILNETTEVSSEIKGSRGFVPSYDIFNELHQPKSQDWELQNVGLTFNASQHANSIPGNLGSEHGNTHNISQHLNTLVDSSSRVKTEKILDPCCEITPFPEHYVQEDLMSALLKQQEGIGPVEGEFDFDGYSMDNIPV* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1183936 1188336 - Vvi5g113 Vvi5g113 786255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g113 533 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Vvi5g113 533 CDD REC_typeB_ARR-like 35 149 - -
Vvi5g113 533 MobiDBLite consensus disorder prediction 157 176 - -
Vvi5g113 533 Gene3D - 33 167 - -
Vvi5g113 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 396 - -
Vvi5g113 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR 403 455 - -
Vvi5g113 533 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Vvi5g113 533 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Vvi5g113 533 SMART REC_2 33 145 IPR001789 GO:0000160
Vvi5g113 533 Gene3D - 210 272 - -
Vvi5g113 533 MobiDBLite consensus disorder prediction 189 209 - -
Vvi5g113 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR 403 455 IPR045279 GO:0009736
Vvi5g113 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 396 IPR045279 GO:0009736
Vvi5g113 533 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Vvi5g113 533 MobiDBLite consensus disorder prediction 157 209 - -
Vvi5g113 533 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vvi5g113 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Vvi5g113 533 SUPERFAMILY CheY-like 32 156 IPR011006 -
Vvi5g113 533 PIRSF RR_ARR_type-B 10 512 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g113 Vvi7g354 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14817 PF00072 Response_reg 2.00E-22 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g113 - K14491 vvi:100263661 748.814