Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1131 ATGGCATTTCCTCTGAAGGAAGAAGAAGAGGAGGTCGACTCCGGCACCGGCACTCCCGTCCGCTACCTTCCTCTTCGCCACGTCTATTCCACTTCTGCGCCTTGCGTCAGTGCCAGTGGATCGTCTAACGTCGTCACCAAGAAGGTCAAGGCCAGGAGGATGATCGCCGACGGCTTTGACGGCGAGGGCGACGGCGTCGATCAGAAGCCGTACCCGGCTAAGCCTCCGGTCGTGCACGTGTACGCCCGGCGCCGCAAGAGGCCGCGCAATTTGACAGCGGAGCGACCGGAGTCGGGGGCTTTGGTGGCTGTGAAGGAGGAGAGGTGTGAATCGGATGGTTGCGAAGGGGTTGGTGGTGGAGATCGAGGCGTAGGGGTTTTGGGGAAGAAGAGGAGAAGTGCGAATTTGGAGGTGAAAAACTTGGGCGATAATTCGAGGGGAGTGGGCAGTTCAGTACGGCGTCGTTTGAGGGAAGCCAGGAAAGACAGCACTGTCGACCTTCCGCATAGAAGAAAGCGCAAATCTTCGGAGAATTTGACGAAAGTCGACTCTAATTCGGCTTGCATCAAGCGGTGGCTTTGGTTGAATTTTGATGACGTTGATCCTGAAAAATTCATAGGATTACAATGCAAGGTTTACTGGCCGTTGGATGGTGAATGGTACCGTGGTTGCATTATTGGGTATGATTTGGAGGCCAACCGGCATCAGGTTAAATACAATGATGGTGATAAAGAAGAATTGATTCTCTCAAGTGAGAAAATTAAATTTTATGTATCTCGCGAGGATATGCAACATTTGAACCTGAGTCTTAGTGTTAGAAGTCTGGATAGTGATGACATTGATTATGATGAGATGGTTGTGTTGGCTGCAAGTTGGAATGATTGCCAAGACCACGAGCCTGGGGATATCATATGGGCCAAGCTTACTGGTCATGCTATGTGGCCAGCAATTGTTGTGGATGAGTCAATTATTCATAATCGTAAAGGTCTAAACAAAATTTCAAAAGAGAAATCACTTCCTGTGCAGTTTTTTGGTAGTCATGATTTTGCAAGGGTTAAAACTAAACAGGTTACCCCATTTCTTAAGGGACTGCTTTCTTCTTTCCACCTGAAGTGCACAAAACCACATTTCCATCAAAGCTTGGTAGAATCCAAAGCGTATCTCAGCGAACAGAAGCTTTCAAAACGGATGTTACGGATGCAAAAGCTCACAGAGGATGATGATTGTGAAAGTATGAGTGGAGAGGATGAAAAGAGAACTGATTCAGGTGATGATTGCATAGGAGATGAAAGAGTAAAGAGAAAACTAGACGACCTTATAAAATTCCCATTTGAAATAGGGGATTTGCAAGTAATACGCCTTGGAAAAATTGTCAAGGACTCAGATCGTTTCCAGGTTGAGGGATTCATCTGCCCTGAAGGATATACTGCTATGAGAAAGTTTACTTCAATTACAGATCCAAGCTTATGCGCATTATATAAAATGGAAGTGCTGAGAGATGCTGAATCAAAGATTCAACCCTTATTTAGGGTGACATTGGACAATGGAGAGCAGTTCCAAGGATCAACTCCATCTTCTTGCTGGAATAAAATTTTTAGAAGGATAAGAAAGATGCAAAACAGTGCTTCTGATGGTTCTAGTGCAGAAGGTGGAGCTGAAAAATTAAATGAATCCGGTTTTGATATGTTTGGCTTTTCCAATCCTGAGATTTTCAGACTTGTACAGGAGTTGTCAACTTCCAAAATTTCCTCAAAATTCTCCATGTCCAAGTCAATCTCTAGAAGATATCAAGACTTGTCTTCTGGTTACAGGCCTGTTCGTGTTGACTGGAAAGATCTTGATAAATGCAGTGTTTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTTCAGTGCGACAAATGCAGAATGATGGTTCATGCTAGATGCTATGGGGAATTAGAACCTGTTGATGGGGTGCTATGGTTATGCAAATTATGTGGCCCAGGGGCTCCTGATTCCCCCCCTCCTTGCTGCCTCTGTCCTGTTACCGGTGGGGCCATGAAGCCTACAACTGATGGACGCTGGGCTCATCTGGCTTGTGCCATCTGGATACCTGAAACTTGCTTATCCGATATCAAAACCATGGAGCCCATTGATGGACTGAGTAGAATCAATAAGGACCGATGGAAGCTTCTATGTAGCATCTGTGGTGTTTCTTATGGGGCTTGCATCCAATGTTCAAACAGTACTTGTCGTGTAGCTTATCACCCACTTTGCGCACGTGCTGCGGGCCTTTGTGTTGAACTTGAGGATGAGGATAGACTCCATCTGATTTCTGTAGAGGATGATGAGGATGATCAGTGCATTCGACTACTTTCCTTCTGCAAGAAGCATAGACAGCCATCTAATGAGCGTACAGCTTTTGATGAAAGGATTGGGCAAGTGGCTCGTGAATGTTCTAACTATAACCCGCCTTCTAATCCATCAGGCTGTGCTCGCACTGAGCCTTATAACCATTTTGGGAGAAGGGGTCGGAAAGAACCTGAAGCCCTTGCTGCTGCATCCTTGAAGCGGTTGTTTGTAGATAATAGGCCATATTTGGTTGGTGGTTACTGTTCTAAATTTTCCTTCAGAAATCAAAAAATAAAAGCTTCTCAGCTTGATGCTCCTAAGAGCATACTCTCTATGGTTGAGAAATATAATTACATGAGGGAGACCTTCAGAAAGAGACTGGCTTTTGGAAAATCAGGAATACATGGATTTGGCATATTTGCGAAGCAGCCACATAGAGCGGGAGATATGGTTATTGAATATACAGGCGAACTTGTTAGACCCTCAATAGCTGACAGGAGAGAACGACTCATATACAATTCGTTGGTGGGTGCAGGGACTTATATGTTCCGTATTGATGATGAACGCGTCATTGATGCCACAAGGGCAGGAAGCATAGCTCATTTGATTAATCACTCATGTGAACCAAATTGCTATTCGAGAGTTATAAGTTTTAATGGTGATGACCATATAATTATTTTTGCGAAGAGGGATATTAAGAGATGGGAAGAACTGACTTACGATTACAGATTTTTTTCAATTGATGAACAACTAGCATGTTATTGTGGCTTCCCAAGATGCCGTGGTGTGGTCAATGACATTGATGCAGAGGAGCGAATGGCAAAGCGATATGCGCCTCGCAGTGAATTGATAGGTTGGATAGGGGAATGA 3207 44.62 MAFPLKEEEEEVDSGTGTPVRYLPLRHVYSTSAPCVSASGSSNVVTKKVKARRMIADGFDGEGDGVDQKPYPAKPPVVHVYARRRKRPRNLTAERPESGALVAVKEERCESDGCEGVGGGDRGVGVLGKKRRSANLEVKNLGDNSRGVGSSVRRRLREARKDSTVDLPHRRKRKSSENLTKVDSNSACIKRWLWLNFDDVDPEKFIGLQCKVYWPLDGEWYRGCIIGYDLEANRHQVKYNDGDKEELILSSEKIKFYVSREDMQHLNLSLSVRSLDSDDIDYDEMVVLAASWNDCQDHEPGDIIWAKLTGHAMWPAIVVDESIIHNRKGLNKISKEKSLPVQFFGSHDFARVKTKQVTPFLKGLLSSFHLKCTKPHFHQSLVESKAYLSEQKLSKRMLRMQKLTEDDDCESMSGEDEKRTDSGDDCIGDERVKRKLDDLIKFPFEIGDLQVIRLGKIVKDSDRFQVEGFICPEGYTAMRKFTSITDPSLCALYKMEVLRDAESKIQPLFRVTLDNGEQFQGSTPSSCWNKIFRRIRKMQNSASDGSSAEGGAEKLNESGFDMFGFSNPEIFRLVQELSTSKISSKFSMSKSISRRYQDLSSGYRPVRVDWKDLDKCSVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVDGVLWLCKLCGPGAPDSPPPCCLCPVTGGAMKPTTDGRWAHLACAIWIPETCLSDIKTMEPIDGLSRINKDRWKLLCSICGVSYGACIQCSNSTCRVAYHPLCARAAGLCVELEDEDRLHLISVEDDEDDQCIRLLSFCKKHRQPSNERTAFDERIGQVARECSNYNPPSNPSGCARTEPYNHFGRRGRKEPEALAAASLKRLFVDNRPYLVGGYCSKFSFRNQKIKASQLDAPKSILSMVEKYNYMRETFRKRLAFGKSGIHGFGIFAKQPHRAGDMVIEYTGELVRPSIADRRERLIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISFNGDDHIIIFAKRDIKRWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDIDAEERMAKRYAPRSELIGWIGE* 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20741173 20798303 - Vvi5g1131 Vvi5g1131 787273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1131 1068 SMART fyrc_3 508 602 IPR003889 GO:0005634
Vvi5g1131 1068 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 6 1065 - -
Vvi5g1131 1068 ProSiteProfiles FYR domain FYRC motif profile. 504 590 IPR003889 GO:0005634
Vvi5g1131 1068 SUPERFAMILY Tudor/PWWP/MBT 291 433 - -
Vvi5g1131 1068 Pfam SET domain 915 1021 IPR001214 GO:0005515
Vvi5g1131 1068 PANTHER PHD FINGER PROTEINS 6 1065 - -
Vvi5g1131 1068 ProSiteProfiles Zinc finger PHD-type profile. 613 664 IPR019787 -
Vvi5g1131 1068 SUPERFAMILY Tudor/PWWP/MBT 204 246 - -
Vvi5g1131 1068 ProSiteProfiles Tudor domain profile. 203 263 IPR002999 -
Vvi5g1131 1068 ProSiteProfiles Extended PHD (ePHD) domain profile. 669 794 IPR034732 -
Vvi5g1131 1068 MobiDBLite consensus disorder prediction 404 425 - -
Vvi5g1131 1068 ProSiteProfiles SET domain profile. 904 1022 IPR001214 GO:0005515
Vvi5g1131 1068 ProSiteProfiles FYR domain FYRN motif profile. 441 500 IPR003888 GO:0005634
Vvi5g1131 1068 Pfam PHD-zinc-finger like domain 671 793 - -
Vvi5g1131 1068 SUPERFAMILY SET domain 902 1041 IPR046341 -
Vvi5g1131 1068 CDD ePHD_ATX1_2_like 672 793 IPR041956 -
Vvi5g1131 1068 Gene3D SET domain 794 1059 IPR046341 -
Vvi5g1131 1068 SMART PHD_3 727 794 IPR001965 -
Vvi5g1131 1068 SMART PHD_3 615 662 IPR001965 -
Vvi5g1131 1068 Pfam F/Y rich C-terminus 506 583 IPR003889 GO:0005634
Vvi5g1131 1068 Pfam PHD-finger 628 661 - -
Vvi5g1131 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 793 IPR013083 -
Vvi5g1131 1068 ProSiteProfiles Post-SET domain profile. 1028 1044 IPR003616 -
Vvi5g1131 1068 CDD SET_SETD1-like 891 1040 - -
Vvi5g1131 1068 MobiDBLite consensus disorder prediction 140 178 - -
Vvi5g1131 1068 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g1131 1068 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g1131 1068 CDD TUDOR 207 247 IPR002999 -
Vvi5g1131 1068 SMART TUDOR_7 202 260 IPR002999 -
Vvi5g1131 1068 ProSiteProfiles PWWP domain profile. 300 363 IPR000313 -
Vvi5g1131 1068 SUPERFAMILY FYVE/PHD zinc finger 609 680 IPR011011 -
Vvi5g1131 1068 SMART PWWP_4 298 361 IPR000313 -
Vvi5g1131 1068 CDD PHD_ATX1_2_like 615 661 IPR042010 -
Vvi5g1131 1068 MobiDBLite consensus disorder prediction 150 178 - -
Vvi5g1131 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 665 IPR013083 -
Vvi5g1131 1068 Pfam F/Y-rich N-terminus 447 497 IPR003888 GO:0005634
Vvi5g1131 1068 Pfam PWWP domain 301 366 IPR000313 -
Vvi5g1131 1068 Gene3D - 203 252 - -
Vvi5g1131 1068 Gene3D - 287 401 - -
Vvi5g1131 1068 SMART set_7 904 1028 IPR001214 GO:0005515
Vvi5g1131 1068 Gene3D - 442 581 - -
Vvi5g1131 1068 ProSitePatterns Zinc finger PHD-type signature. 616 661 IPR019786 -
Vvi5g1131 1068 SMART fyrn_3 456 500 IPR003888 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1131 - - - vvi:100263501 2117.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1131 . . . Bda08g00105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005576 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 4 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14818 PF13832 zf-HC5HC2H_2 1.80E-33 CL0390 Vvi TR