Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1139 ATGATCATGGATGTAGATTTTGATTGCGTTGAACGCCGCTCCAGTTCAACACAACAAGAAGAGGTTGCAGGAATTGCAGAGGAAAAGCATTTCAAAGAACAGCAAGAAACTGAGGTTGATGAAAATTTTCTCGAACTTGAAGAATCTGGGAAACTCAAGAAAATTTCTGGGAATGGAAATGGAAGTAAAGAAAATCATTCAGCTGGTGTTCAAGTTCAAGATTGCACAGAAGGCTTGCCCACCTCGTCTTCTTCGGTTGTAGTTGTTGATGAAAATCAAGAACTGGGAAACGCATCGAAAATTGAAGAGAAATGTTTGCTTGGGTCAGTGGACGAAGCTGAAGAAACCCGTTTGGTGAAATCGGCTGATTCTGAGAGTTTTTTGGTTGGGTCAGTGAATGAAGCTGAACAAAACCATTTGGTAAAATCTGATGATTTGGAGAGTTGGAATGAAACTGTGGTCAAATCTTTCAAGACCAATAGCAGACATAAAAGTGTGGAAGCTGGTGAAAAGATGGTGCAGAATGGTGATGGTGGAAAGGTGAAACCTCTGAGAGGGAAGCTGAAGATTGAGGTGATTGATGACACTGCAGTGATTGATTCTACTTCAATCCCCAGAAGTGGAAATGGGTGTAGTAGACAGAAATCGAAACAAGAAACGGACGAAAGGAGGGATAAACGGACCCGAAGAAAGGCAAAAGGCGGGAAGCAGGGTTTGGAGGCAAATGGGAAGGGAAAGATTGTAGCACAGATTGTAGAAGTGCAAAATAATGAGAGTGGAACGAAGAGGGTTTACTCGCGGGAGGAGATGGAGGTACTGAGGTATATCAATTCTGAAGAACAGCGTAAAATGTGGATGGAGATTCGCTGTAGTCTGGGCCCTGTGGTGCTCAAGGAGTATGATGGCCTGGAAAACTGCACAAATCACAAGCACATCCGTGTTAACTTTGATCCTCGGCAACAGTCTGCCAAGAAGGAAAAGGCCCCTGCAATTCTCAGGGAAGTTAGTTCTTCAAATGTGGATGATGAGATGCAAAACTTGCATCCTCTGGACCCAGCTTATGGTCACAGTGTTGGTGGCAAAGACAGCTATGCTGATCCAGAAGAGTGCAGTGAAGATAGTGACAGTGATGAAGATTATGGTAGCATCCAGAGGCCAGCCTTTTTGGTAGAAGGAGAACCTGATTTTGATTCTGGTCCTCCAGAAGATGGATTAGAATATCTTAGGCGTGTCAGGTGGGAAGCTGCACAGATTCCAGAGGTGACAGTGGCAAAGCTTGACATGAATAAATTGAACAAAGAACAGACTCTTTATATGCCCAAGATTCCTGATATTGCAAAGTGTCCGGAACACTTAGCACCATTGAAAAAGTGGGAGGATGCATTCTTAGCTGATTTTGCAGAGCTGAGAGCGGCTCTGTCCCATCTTGAAGATTCCAGAGTTGAAAATTCTGATAGACAACACCCAGTATTTAGTTTTCATGAAGATTATTCATGTCAGGTTTTGGAGAGCACTTTACCAGAAAATTTTGATAACCTTACAATTGATTCACAGCCACTTGATTGTTCTAACCCCAAAAACTCTGATAAACGGCTGCCCTTGTCAATCATAAATGAAGATGATACCTCATTATCTCCTGAGAATTCCAGTCCAAGAACAGAAAGTTCTGGTAACTACCCTTTGTTGTCTGTGATTCTAGGCATGGACTCTGTAGCTAGAGTATCAATGCTGAGGAAATGCATAAATTCACTGGAGACAAAGAGTACCTTGTCCAGGAGTGATTGCATGTGGCTGTTTGCCCTCTGTGCAGCAATTGATACTCCACTGCATGCTGACACATGTGCTGCTCTTCGGTCTCTGCTCAGAAAGTGTGCAAGCTTGAGGGCTGAAAAATCTGAACTAGATGATGAGGTGGTAATGCTGAACATTCTAGTGACAATTGCAGGCCGGTATTTTAAGCAGTCGGAGAATTGA 1974 43.26 MIMDVDFDCVERRSSSTQQEEVAGIAEEKHFKEQQETEVDENFLELEESGKLKKISGNGNGSKENHSAGVQVQDCTEGLPTSSSSVVVVDENQELGNASKIEEKCLLGSVDEAEETRLVKSADSESFLVGSVNEAEQNHLVKSDDLESWNETVVKSFKTNSRHKSVEAGEKMVQNGDGGKVKPLRGKLKIEVIDDTAVIDSTSIPRSGNGCSRQKSKQETDERRDKRTRRKAKGGKQGLEANGKGKIVAQIVEVQNNESGTKRVYSREEMEVLRYINSEEQRKMWMEIRCSLGPVVLKEYDGLENCTNHKHIRVNFDPRQQSAKKEKAPAILREVSSSNVDDEMQNLHPLDPAYGHSVGGKDSYADPEECSEDSDSDEDYGSIQRPAFLVEGEPDFDSGPPEDGLEYLRRVRWEAAQIPEVTVAKLDMNKLNKEQTLYMPKIPDIAKCPEHLAPLKKWEDAFLADFAELRAALSHLEDSRVENSDRQHPVFSFHEDYSCQVLESTLPENFDNLTIDSQPLDCSNPKNSDKRLPLSIINEDDTSLSPENSSPRTESSGNYPLLSVILGMDSVARVSMLRKCINSLETKSTLSRSDCMWLFALCAAIDTPLHADTCAALRSLLRKCASLRAEKSELDDEVVMLNILVTIAGRYFKQSEN* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20915174 20938514 - Vvi5g1139 Vvi5g1139 787281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1139 657 PANTHER GEMIN2 265 656 - -
Vvi5g1139 657 MobiDBLite consensus disorder prediction 161 180 - -
Vvi5g1139 657 PANTHER GEM-ASSOCIATED PROTEIN 2 265 656 - -
Vvi5g1139 657 MobiDBLite consensus disorder prediction 50 83 - -
Vvi5g1139 657 Coils Coil 617 637 - -
Vvi5g1139 657 MobiDBLite consensus disorder prediction 536 556 - -
Vvi5g1139 657 Pfam Survival motor neuron (SMN) interacting protein 1 (SIP1) 393 654 IPR035426 GO:0000387
Vvi5g1139 657 Gene3D - 452 657 - -
Vvi5g1139 657 MobiDBLite consensus disorder prediction 55 83 - -
Vvi5g1139 657 MobiDBLite consensus disorder prediction 201 242 - -
Vvi5g1139 657 MobiDBLite consensus disorder prediction 538 556 - -
Vvi5g1139 657 MobiDBLite consensus disorder prediction 338 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1139 K13130 GEMIN2, SIP1; gem associated protein 2 - vvi:100260062 1280.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1139 . . . . . Bpe14g01046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008566 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34