Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1140 ATGGGTGGGGGCGAGTTTCGTCGGCCCGGTTTGGTGGCATATGCTCCTCCTCCTGGCTACTTCGTATTGGAGAATAACATTACTCTAGAGGATATTTCTGTGACTAAAAGAGGCAGGATGCGGAGGTGGCTCTGTTGTACTTGTCACGTGGAAGAGCCTTACCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAAGACAGCACCCCCTATTGAAGTACCTGAATTGTCTCTGGAAGAACTAAAGGAAAAGACTGACAATTTTGGATCAAAGGCATTGATTGGGGAAGGATCCTATGGAAGAGTATATTACGCCAGCTTGAATAATGGAAAAGCTGTGGCTGTAAAAAAACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGTTATTGTGTGGACGGAAACCTCCGTGTGTTGGCATACGAGTTTGCAACCATGGGATCTCTGCACGACATTTTGCATGGCAGAAAGGGAGTCCAGGGGGCACAACCAGGTCCTGTGCTTGACTGGATGCAACGGGTGAGAATTGCTGTTGATGCAGCTCGGGGATTGGAGTATCTCCATGAAAAGGTTCAACCTTCCATAATACATAGAGATATCAGATCTAGCAATGTGCTCCTATTTGAAGACTTTAAAGCCAAGATTGCAGATTTTAATCTTTCAAATCAGGCTCCTGACATGGCTGCTCGCCTTCATTCTACTCGAGTCCTGGGGACCTTTGGCTATCATGCACCAGAGTATGCAATGACTGGACAATTGACTCAGAAGAGTGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAACTAAAGGGAGAATATCCTCCGAAAGGAGTTGCTAAGCTGGCAGCTGTGGCAGCATTATGTGTTCAGTACGAAGCTGAGTTCCGGCCAAATATGAGCATCGTTGTGAAGGCTCTCCAACCGCTTTTAAAGGCTGCTGCCCCAGCTCCTGAGGTTTAA 1206 46.1 MGGGEFRRPGLVAYAPPPGYFVLENNITLEDISVTKRGRMRRWLCCTCHVEEPYQSNESELLKSPRNHTDGNPKGSKVSAPVRSEVQKTAPPIEVPELSLEELKEKTDNFGSKALIGEGSYGRVYYASLNNGKAVAVKKLDVSSEPETPVEFLTQVSMVSRLKHENLVELLGYCVDGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDIRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAAAPAPEV* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20953221 20959005 - Vvi5g1140 Vvi5g1140 787282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1140 401 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vvi5g1140 401 ProSitePatterns Tyrosine protein kinases specific active-site signature. 238 250 IPR008266 GO:0004672|GO:0006468
Vvi5g1140 401 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 26 401 - -
Vvi5g1140 401 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 26 401 - -
Vvi5g1140 401 Gene3D Phosphorylase Kinase; domain 1 75 186 - -
Vvi5g1140 401 Gene3D Transferase(Phosphotransferase) domain 1 188 398 - -
Vvi5g1140 401 SMART tyrkin_6 110 388 IPR020635 GO:0004713|GO:0006468
Vvi5g1140 401 MobiDBLite consensus disorder prediction 56 88 - -
Vvi5g1140 401 Pfam Protein tyrosine and serine/threonine kinase 115 388 IPR001245 GO:0004672|GO:0006468
Vvi5g1140 401 CDD STKc_IRAK 116 391 - -
Vvi5g1140 401 SUPERFAMILY Protein kinase-like (PK-like) 88 388 IPR011009 -
Vvi5g1140 401 ProSiteProfiles Protein kinase domain profile. 110 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1140 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - vvi:100249750 681.404
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76647 PF07714 PK_Tyr_Ser-Thr 5.30E-47 CL0016 Vvi PK