Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1142 ATGACCAGCAAGGAGAAGCTCGACATTGCCCGCCAGCTGGCGAAGCTCGGCGTCGATATTATCGAGGCTGGGTTTCCCGCGGCGTCGAAGGATGATCTTGACGCGGTGAAGATTATCGCGAAAGAGGTGGGCAATGCGGTAGATGAGAATGGGCATGTGCCGGTGATTTGCGGGCTGGCGAGGTGTAATAGAAACGATATTAGCACGGCGTGGGAGGCATATAAGCTGAAGAAGAGTGAGAAGGAGGTGATAGAGATTGCAAGGGAGATGGTGAAGTATGCCAGGAGTTTGGGGTGTGATGATGTCGAGTTCAGTCCTGAAGATGCTGGCAGATCTGAAAGGGAGTTTCTCTATAAGATTCTAGGGGAAGTTATCAAGGCTGGTGCAACAACACTGAACATTCCTGACACCGTGGGTTATACCGTGCCTAATGAATTCGGACAATTGATTGCTGACATAAAATCCAACACCCCTGGAATTGAAAATGTGATCATTTCAACGCACTGCCAAAATGATCTTGGGCTCTCTACTGCTAACACAATAGCGGGGGCATGTGCAGGGGCAAGACAAGTAGAAGTAACTATTAATGGAATTGGTGAAAGAGCTGGAAATGCTTCACTGGAGGAGGTGTGTTTAATCTATAGACTAGCTCCTGGATTATGTACAGATACACAACTTAATGGAGTCATAAATCTTAGTATGAATTTATCCGGAATATGGAGAAGCTGGATCACTGCTTGGTGGGGAGCTGGAACCCTAGCTGACCTGAGGGGTTGGGGGACAAACTTGGCAAAATTTTGGAGTTTGAAGGGTAATTTAGGAATAGCGATGCTGGAAAGGGGCAAAGTCCTATTAGAATTTGAGGTTCTGGCTGAAGCAGAGAAAGCCCTAAAAATTGGGGGTTTCTTGTGCGCAGGGTCTCCTCTCAGTCTGGAAAAATGGAGGCCTGAGAGGGGGTGTCTGCTGGAGGGGGAAAAGAGGAGCGAGGCTTGGGTGCGTATCGTGGGACTGGCAGTCTCACTATGGGAGCGGGATATTCTGAGGAGAATAGGGGATGCCTGTGGGGGGTTTCTCGATATCGACTCTCAGACAGAGACGTTGGAAGATTTGCAGTGGGCAAGGATCTTGGTGAAGCTTAACGAGGAGAGGCCCCCTAACGTAGTGGAAGTTTGGACCGAAGAGTTTTGCTATGAGCTTACTCTTTGGTGGGAAATCAGACTTGCTGTGAGAATGGAAAGGGAAAGAAAGGGTAAAAACAAGCTTGTCTCAGAGGGCGAGGTTGGGGGTGAAGTCATTGCACGTGCGGGGGGGCGCATGAGGGGGTTGGTAGGTGGTCCAAGTCTCGAGGTCCGGCTGCAGTCTAACGATGGGACGAGGGGGCAGTCCTCTGGGTCGGGTCCTGCTGCGGATCCGGACTCGGGCTTGGTGTTGGATGGGCCCCACGAATCTTGTGGGTTGACGCCGGAATTTCTGGACCGCAGGATGATTGGAAGGATGTCTTCAGCGCTGAAGACTGCAGATGCACAAGACCCCTTGCAAAACAAACCAAACTACGAAACCCTTACAAGTAAAAGAGACCTTGGGGGAATTGAATCCAAACCCTTATTGGGAAACAAACCCACACACCCATCACCTTTGCCCTTAACTGAAATCCCCTCGATCAAGTCCCTTTGCGAAGCAAGGCTATTAGCCACAACCAGGAAAAAAAGCCAACAGAGCCAACAACTTAAACCCAATAAAAACCTCATGCAACAAGATTACCAATTGAATAACTTCAACTTTGAAGATACCCGCTCCTTAGACCTGAAAAGAGGAAGTCCCTCCCTTATGATCCTTAAGACCTTTCTTGAAGATGGGATCATTAAAAAACCCTCCTCTCTCATTCATCTCACCAAGTTTCTTCTTGTCTCTCAGGATAAGAGCATCCTCTCATCTCCTTTATTCATTTCTGATTATTTCTCAGTCAAGTTTCTATTTGTTTTGGTTTCTAATTTGATTAGGAAGAAGAGTCATATTCCTACTACTTTAACCTATATGGTTGTAATGGCCTTAAAATGCCGTGGAGAAAAAGCATTAGGAGGCCTTTATACGGGGATCAATATACGACATATTGTTAAGACAAGCAAGATGGTAGCAGAGTACAGTGGACTACAAGTGCAGCCACACAAGGCTATTGTTGGAGCCAATGCCTTTGCTCATGAAAGTGGCATCCATCAGGATGGAATGCTTAAGCATAAAGAAACATATGAGATCATATCTCCAGAAGATATTGGTCTTTTTCGATCTAACGAATCTGGTATTGTCCTTGGAAAACTTAGTGGACGGCATGCTTTGAAGAGTCGACTTTTGGAGCTTGGTTATGAGATTGAGGGTATGGAACTTGATGATATCTTCTGGCGATTCAAAGAAGTAGCTGAGAAGAAAAAGAATCTGACTGATGTTGATGTAATAGCATTGGTATCGGATGAAATATTTCAGCCAAAAGTTTTTTGGAAGCTTGGTGATCTGCAGGTGACTTGTGGCACTCTTGGTCTTTCTACAGCGACTGTTAAGCTCATTGATGCTGATGGGCAAAAGCATGTTGCCTGTTCAGTCGGGACTGGGCCAGTTGATTCAGCTTACAAGGCCATTGATCTCCTTGTGAAGGAACAAGTTACACTTCTTGAGTATGGTTTGAATGCTGTCACAGAAGGTATTGATGCAATAGCTACCACGCGGGTTTTAATCCGTGGGGAGAAAAATCACACCTTAACTAATGCTTTGACAGGAGAGACTGTTCATCGTTCATTTAGTGGGACTGGGGCAGGAATGGATATTGTCGTCTCCAGTGTTCGGGCCTACATTAGTGCGCTAAACAAAATGTTAGGTTTCAAAGACCAATCCAAACCAAAGGTTAGTGCAGACAGATCTCAAGACTCTGTTTGA 2925 46.29 MTSKEKLDIARQLAKLGVDIIEAGFPAASKDDLDAVKIIAKEVGNAVDENGHVPVICGLARCNRNDISTAWEAYKLKKSEKEVIEIAREMVKYARSLGCDDVEFSPEDAGRSEREFLYKILGEVIKAGATTLNIPDTVGYTVPNEFGQLIADIKSNTPGIENVIISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVCLIYRLAPGLCTDTQLNGVINLSMNLSGIWRSWITAWWGAGTLADLRGWGTNLAKFWSLKGNLGIAMLERGKVLLEFEVLAEAEKALKIGGFLCAGSPLSLEKWRPERGCLLEGEKRSEAWVRIVGLAVSLWERDILRRIGDACGGFLDIDSQTETLEDLQWARILVKLNEERPPNVVEVWTEEFCYELTLWWEIRLAVRMERERKGKNKLVSEGEVGGEVIARAGGRMRGLVGGPSLEVRLQSNDGTRGQSSGSGPAADPDSGLVLDGPHESCGLTPEFLDRRMIGRMSSALKTADAQDPLQNKPNYETLTSKRDLGGIESKPLLGNKPTHPSPLPLTEIPSIKSLCEARLLATTRKKSQQSQQLKPNKNLMQQDYQLNNFNFEDTRSLDLKRGSPSLMILKTFLEDGIIKKPSSLIHLTKFLLVSQDKSILSSPLFISDYFSVKFLFVLVSNLIRKKSHIPTTLTYMVVMALKCRGEKALGGLYTGINIRHIVKTSKMVAEYSGLQVQPHKAIVGANAFAHESGIHQDGMLKHKETYEIISPEDIGLFRSNESGIVLGKLSGRHALKSRLLELGYEIEGMELDDIFWRFKEVAEKKKNLTDVDVIALVSDEIFQPKVFWKLGDLQVTCGTLGLSTATVKLIDADGQKHVACSVGTGPVDSAYKAIDLLVKEQVTLLEYGLNAVTEGIDAIATTRVLIRGEKNHTLTNALTGETVHRSFSGTGAGMDIVVSSVRAYISALNKMLGFKDQSKPKVSADRSQDSV* 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20967341 21013412 - Vvi5g1142 Vvi5g1142 787284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1142 974 PANTHER HOMOCITRATE SYNTHASE-RELATED 680 959 - -
Vvi5g1142 974 PANTHER HOMOCITRATE SYNTHASE-RELATED 1 215 - -
Vvi5g1142 974 SMART LeuA_dimer_2 810 955 IPR013709 GO:0003852|GO:0009098
Vvi5g1142 974 PANTHER 2-ISOPROPYLMALATE SYNTHASE A-LIKE ISOFORM X1 1 215 - -
Vvi5g1142 974 PANTHER 2-ISOPROPYLMALATE SYNTHASE A-LIKE ISOFORM X1 680 959 - -
Vvi5g1142 974 Pfam Domain of unknown function (DUF4283) 241 377 IPR025558 -
Vvi5g1142 974 Gene3D - 841 955 IPR036230 -
Vvi5g1142 974 SUPERFAMILY Aldolase 1 240 - -
Vvi5g1142 974 MobiDBLite consensus disorder prediction 451 468 - -
Vvi5g1142 974 MobiDBLite consensus disorder prediction 503 550 - -
Vvi5g1142 974 CDD DRE_TIM_IPMS 1 210 - -
Vvi5g1142 974 ProSiteProfiles Pyruvate carboxyltransferase domain. 1 230 IPR000891 GO:0003824
Vvi5g1142 974 Gene3D Aldolase class I 1 242 IPR013785 -
Vvi5g1142 974 Gene3D - 718 829 - -
Vvi5g1142 974 Pfam LeuA allosteric (dimerisation) domain 811 955 IPR013709 GO:0003852|GO:0009098
Vvi5g1142 974 MobiDBLite consensus disorder prediction 506 521 - -
Vvi5g1142 974 MobiDBLite consensus disorder prediction 445 482 - -
Vvi5g1142 974 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 841 954 IPR036230 -
Vvi5g1142 974 Pfam HMGL-like 1 224 IPR000891 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1142 K01649 leuA, IMS; 2-isopropylmalate synthase [EC:2.3.3.13] - vvi:100249820 578.556
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1142 . . . . . . . Bma05g01242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002187 1 1 2 2 2 2 3 3 3 1 2 2 4 1 2 3 2 2 2 2 1 3 2 3 2 2 2 2 3 1 63