Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1145 ATGGCTCAAGCTATAGAATCACGTACCCTTAACTTTGATTCCAATTCCAATCAGGTTGAAGATGCTGGCCAAACCCCGATCTCAAACCAGGATGCTCCTCAAGGTGGTAGCCAAACCGAGATCACGCAAGAGGTTGCAGGTGACAATATTAGCCAAACTGAGATCTCAAACCAGACGGCAGCTGAAGATGGTACTGGGACTGACATCAGACACATGGATGCTAGATTTTACGAGGCTGCCGCAGAAGGCAATATGAACATACTATGGAATATGTCCTTTGTTTATATGCGGGATAAATTAACCCCTAAAAGGAACACAATCCTCCACATTGCAGCCCAATTTGGTCAAATCGACTGTGTTAATTGGATCCTTCAGTTTCGTCCATTGTCATCTCTACTGCTGCAACCTAATCTGAAAGGGGATACTCCTCTTCACCTTGCAGCAAGGGAAGGCTACTGGATGGTCACACAAGCTCTTATTGAAGCTGCAAAAGCACTTCCCAGTGGAAGTGGGATTGGAGCAGATAAGATGATGCTAAGGATGACAAATAATGAGAATGATACAGCCTTGCACGAGGCAGTGCGATATAATCACTCTAATGTGGTGAAGTTATTGATCCTGAAAGATCCAGATTTCATCTATGGTGCTAACTTTTCTGGTGGAACCCCTCTTTATATGGCTGCCGAAAGAGGATTCCATGAGTTGGTGCAAATAATCATAGACAACACTCGCACTTCACCAGCTCATAGTGGCCTCACGGGTAGGACAGCTCTGCATGCTGCCGTAATCTGCAACAATGAAGGTATGTGCTGA 813 45.14 MAQAIESRTLNFDSNSNQVEDAGQTPISNQDAPQGGSQTEITQEVAGDNISQTEISNQTAAEDGTGTDIRHMDARFYEAAAEGNMNILWNMSFVYMRDKLTPKRNTILHIAAQFGQIDCVNWILQFRPLSSLLLQPNLKGDTPLHLAAREGYWMVTQALIEAAKALPSGSGIGADKMMLRMTNNENDTALHEAVRYNHSNVVKLLILKDPDFIYGANFSGGTPLYMAAERGFHELVQIIIDNTRTSPAHSGLTGRTALHAAVICNNEGMC* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21065719 21066532 + Vvi5g1145 Vvi5g1145 787287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1145 270 Gene3D - 7 214 IPR036770 -
Vvi5g1145 270 ProSiteProfiles Ankyrin repeat profile. 185 206 IPR002110 GO:0005515
Vvi5g1145 270 ProSiteProfiles Ankyrin repeat profile. 219 242 IPR002110 GO:0005515
Vvi5g1145 270 ProSiteProfiles Ankyrin repeat profile. 139 161 IPR002110 GO:0005515
Vvi5g1145 270 Gene3D - 215 270 IPR036770 -
Vvi5g1145 270 ProSiteProfiles Ankyrin repeat region circular profile. 139 161 - -
Vvi5g1145 270 ProSiteProfiles Ankyrin repeat region circular profile. 219 242 - -
Vvi5g1145 270 MobiDBLite consensus disorder prediction 1 41 - -
Vvi5g1145 270 PANTHER MOLTING PROTEIN MLT-4 72 265 - -
Vvi5g1145 270 MobiDBLite consensus disorder prediction 47 66 - -
Vvi5g1145 270 SUPERFAMILY Ankyrin repeat 77 268 IPR036770 -
Vvi5g1145 270 MobiDBLite consensus disorder prediction 47 64 - -
Vvi5g1145 270 Pfam Ankyrin repeats (3 copies) 135 208 IPR002110 GO:0005515
Vvi5g1145 270 Pfam Ankyrin repeats (3 copies) 215 267 IPR002110 GO:0005515
Vvi5g1145 270 ProSiteProfiles Ankyrin repeat region circular profile. 185 206 - -
Vvi5g1145 270 PANTHER ANKYRIN REPEAT PROTEIN 72 265 - -
Vvi5g1145 270 SMART ANK_2a 103 134 IPR002110 GO:0005515
Vvi5g1145 270 SMART ANK_2a 219 249 IPR002110 GO:0005515
Vvi5g1145 270 SMART ANK_2a 139 168 IPR002110 GO:0005515
Vvi5g1145 270 SMART ANK_2a 185 214 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1145 - - - vvi:104879430 538.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .