Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g1146 | ATGTGTCAAAGGGGTTTAAGGATTTTGCTCTCTAACTCACTTCCAATGACAACCCACTTCTTTGCTTCTAAACCTTTCAAAATTTCAACCATCAGTAGATTCATCTGCACCTCTTCTTCCGAGGATAATCTCCACGGTTTGGTCGATTCCGATTTCAGTGTCCCCGAAAGTTCGCGGGTGGAATCCTTTTTGGCCGAGGAGTTTGCATTCTTGCGGGATTCTTTGTTGGAAACTGGTTCTGACACTGGCGCTTCAGTGAATAAATCGGTATCTGGTAGGTGTTCTAATGATGCGGTTTTGATTTCGGATGTTATTAGGAATACTGGTGATGGGTTTGGGCACAAAACCCAGAAGTTTCTTAGGCAATTTAGGGAGAAATTGAATGAAACTTTGGTGGTTGATGTGTTGAGTCTTGTGAAAAACCCTGAATTGGGTGTTAAATTCTTTATCTGGGCAGGCAGGCAGATTGGGTATGGTCACACGGGGCCTGTTTATCATGCCTTATTGGAGGTATTGGGTTGTGGGGGCAATGATAGAGTACCGGAACAATTTCTCCGAGAAATTAGAGATGAAGATAAGGAAATACTTGGGAAGTTGCTTAATGTTTTGATTCGGAAGTGTTGCCGAAATGGACTGTGGAATGTGGCACTGGAGGAGTTGGGGAGGCTTAAGGACTTAGGATACAAGCCCTCAAGATTGACTTATAATGCTTTGGTTAGAGTTTTTCTAGAGGCAGATAGGTTGGACACAGCTTATTTGGTTCATAGAGAAATGTCTGATTCTGGTTTTAATATGGATGGGTATACACTGGGTTGCTTTGTGCATTTGCTGTGCAAAGCAGGCAGGTGGAGGGAGGCGCTTGCACTGATTGAGAAGGAAGAATTTAAACTTGATACAGTGATTTATACACAGATGATATCTGGGTTGTGTGAAGCTTCGCTTTTTGAAGAAGCTATGGATTTCCTGAGTAGGATGCGGTCTAGTTCTTGCATTCCTAATGTTGTCACTTATAGGATTTTGCTTTGTGGGTGTTTGAGAAAAAGACAGCTCGGTAGGTGTAAGAGGATTCTTAGTATGATGATTACAGAAGGTTGTTATCCAAGTCGTAGAATATTTAATTCTCTTATTCATGCCTATTGCAGATCGGGAGACTACTCTTATGCCTATAAGTTGCTCAAGAAAATGGGAGATTGTGGCTGCCAGCCAGGTTATGTGGTTTATAATATACTAATTGGTGGTATTTGTGGCAATGAGAAGTTACCTAGCTTGGATGTGTTAGAATTGGCTGAAAAAGCTTATGGTGAAATGCTTGATGCTCACGTTGTATTAAACAAGGTCAATGTCAGCAATTTGGCACGGTGTCTCTGTGGGGCTGGAAAGTTTGAGAAAGCATATAGCATTATTCGTGAAATGATGAGTAAGGGTTTCATACCTGACACCAGCACGTACTCAAAAGTGATTGGTTTACTTTGTAATGCGTCCAAGGTAGACAACGCTTTCCTATTGTTTGAAGAAATGAAAAGTAATCATGTTGTTCCAGATGTCTTTACATATACAATTTTAATTGATAGCTTTTGTAAAGTGGGCCTTCTTCAACAGGCTCGTAAATGGTTTGATGAAATGGTAAGGGATGGTTGTGCCCCTAATGTGGTGACTTATACTGCCCTTATACATGCTTACCTTAAGGCAAGGAAGATGTCCAGTGCAAATGAGCTCTTTGAGATGATGCTATCTGAAGGTTGCATTCCAAATGTTGTCACGTATACTGCCCTGATTGATGGTCACTGTAAATCTGGGCAAATTGAAAAAGCTTGCCAGATTTATGCAAGAATGAGGGGAAATGCAGATATTCCGGATGTGGACATGTACTTCAAGATTGATGATGGCAACATCAGAGATCCAAACATTTTTACTTATGGAGCTCTGGTGGATGGTTTGTGCAAAGCACACAAGGTTAAAGAAGCACGTGATTTATTGGATGTCATGTCAGTGGAAGGTTGTGAGCCAAATCATATTGTTTATGATGCTCTTATCGATGGGTTTTGCAAGGTTGGAAAATTAGATGAAGCACAAATGGTTTTTACCAAGATGTCAGAACGTGGGTATGGTCCAAATGTGTATACTTATAGCTCTCTTATTGATCGGTTGTTTAAAGATAAACGGTTGGATCTCGCTTTAAAAGTCTTGTCCAGAATGCTAGAAAATTCTTGTGCTCCCAATGTTATTATCTATACGGAGATGATTGATGGCCTCTGTAAAGTTGGGAAGACAGATGAGGCTTATAGGCTTATGTCGATGATGGAAGAAAAGGGGTGTCATCCAAATGTTGTGACTTATACTGCAATGATAGATGGATTTGGAAAGGCCGGTAAAGTTGACAAATGTCTTGAGCTCATGAGACAAATGGGTGCCAAGGGTTGTGCTCCAAATTTTGTCACCTACAGGGTTTTGATAAACCATTGTTGTGCTGCTGGCCTTTTGGATGATGCTCACCAACTTTTGGATGAGATGAAACAGACATATTGGCCTAAACATATGGCAGGCTATCGTAAGGTCATTGAAGGTTTCAACAGAGAGTTCATAATCTCTCTTGGCCTTCTAGATGAGATAGCTGAGAATGTTGCAGTGCCAATAATTCCAGCCTATAGAATTCTGATTGATAGCTTCTGCAAGGCGGGGAGGCTGGAATTGGCTCTAGAGCTGCATAAAGAGATGTCGTCATGTACATCTTATTCAGCTGCAGACAAGGATTTGTACTCTTCTTTAATTGAGAGCCTCTCCCTTGCAAGTAAGGTTGATAAGGCTTTTGAGTTGTATGCTGACATGATAAAGAGGGGTGGTATTCCAGAGCTAAGCATTTTTTTCTACCTCGTGAAGGGGCTCATTAGAATTAACAGGTGGGAAGAGGCACTTCAACTTTCAGATTGCATATGTCAAATGGTACATGTCTCTAATTCTTCCTCTCTTATTTTGAAACATGCTATATATTGA | 2991 | 40.92 | MCQRGLRILLSNSLPMTTHFFASKPFKISTISRFICTSSSEDNLHGLVDSDFSVPESSRVESFLAEEFAFLRDSLLETGSDTGASVNKSVSGRCSNDAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMVHVSNSSSLILKHAIY* | 997 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 21078965 | 21081956 | - | Vvi5g1146 | Vvi5g1146 | 787288 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g1146 | 996 | Gene3D | Tetratricopeptide repeat domain | 292 | 423 | IPR011990 | GO:0005515 | |
| Vvi5g1146 | 996 | Gene3D | Tetratricopeptide repeat domain | 133 | 291 | IPR011990 | GO:0005515 | |
| Vvi5g1146 | 996 | Gene3D | Tetratricopeptide repeat domain | 424 | 533 | IPR011990 | GO:0005515 | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 635 | 669 | IPR002885 | - | |
| Vvi5g1146 | 996 | Gene3D | Tetratricopeptide repeat domain | 534 | 629 | IPR011990 | GO:0005515 | |
| Vvi5g1146 | 996 | Gene3D | Tetratricopeptide repeat domain | 630 | 718 | IPR011990 | GO:0005515 | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 584 | 618 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 516 | 550 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 482 | 515 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 371 | 402 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 673 | 706 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 881 | 907 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 812 | 838 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 777 | 810 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 918 | 947 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 743 | 776 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 300 | 334 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 451 | 480 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 707 | 741 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 368 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 551 | 585 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 234 | 266 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 637 | 670 | IPR002885 | - | |
| Vvi5g1146 | 996 | TIGRFAM | PPR: pentatricopeptide repeat domain | 586 | 612 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Vvi5g1146 | 996 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 64 | 851 | - | - | |
| Vvi5g1146 | 996 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 862 | 982 | - | - | |
| Vvi5g1146 | 996 | Pfam | Pentatricopeptide repeat domain | 201 | 242 | IPR002885 | - | |
| Vvi5g1146 | 996 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 64 | 851 | - | - | |
| Vvi5g1146 | 996 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 862 | 982 | - | - | |
| Vvi5g1146 | 996 | SUPERFAMILY | HCP-like | 451 | 771 | - | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 479 | 513 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 915 | 949 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 810 | 844 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 514 | 548 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 705 | 739 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 740 | 774 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat | 271 | 291 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat | 919 | 946 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat | 450 | 476 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat family | 298 | 345 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat family | 486 | 527 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat family | 548 | 597 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat family | 669 | 717 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat family | 739 | 787 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat family | 371 | 415 | IPR002885 | - | |
| Vvi5g1146 | 996 | Gene3D | Tetratricopeptide repeat domain | 719 | 863 | IPR011990 | GO:0005515 | |
| Vvi5g1146 | 996 | Gene3D | Tetratricopeptide repeat domain | 864 | 993 | IPR011990 | GO:0005515 | |
| Vvi5g1146 | 996 | Pfam | PPR repeat | 634 | 663 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat | 805 | 838 | IPR002885 | - | |
| Vvi5g1146 | 996 | Pfam | PPR repeat | 882 | 906 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 670 | 704 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 231 | 265 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 775 | 809 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 444 | 478 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 878 | 908 | IPR002885 | - | |
| Vvi5g1146 | 996 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 549 | 583 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g1146 | - | - | - | vvi:100261818 | 1979.14 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1146 | . | . | . | . | . | . | . | . | . | Cmo17g00570 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla08g00440 | Cam08g0873 | Cec08g0452 | Cco08g0574 | Clacu08g0589 | . | Cre08g0412 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cma17g00588 | . | Car17g00544 | Cpe12g00501 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009746 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 32 |