Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1148 ATGGGCTCTAGTGGAGTGAACTTTTCAGCATTGAGGATAAAGAAGGGACCAACAAATCAATGTGTTTGCCTGGTTGATGCATTGGGCAATCATACTATGCGGCCCTGTATCTCAAGTGTTGTTAAGATTCAGGCAGAGGAATTAACTAAAGAGGATTTTAACGGGGTAAAGTGGTTGGTAATGAGATATGGGATATATAATTTGGAAGTTATTCATGCTGCAATTCAGATGGCCAAAGAGGAGGGCATATTTGTATCCTTGGATTTGGCCAGTTTTGAGATTGGCCAGGGAACTTACAGTAATGTTTACAGGGCTCGTGATCTGGACAAACGGAAAATTGTTGCTTTGAAGAAAGTTAGGTTTGATAACCTGGAGCAAGAGAGTGTCCGCTTTATGGCAAGGGAAATTCATGTTCTGCGCAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTAGTCACATCAAGGATGTCTTGCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTAGCAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGTATCGTGATATAAAGGGTTCCAACCTTCTAATTGACAACAGTGGCATCTTGAAGATAGCAGACTTTGGTTTGGCAAGTTTTTTTTATCCCCATCAAATCCAGCCACTGACAAGCCGTGTGGTAACACTTTGGTACCGGCCACCTGAGCTCTTACTTGGAGCCACTTACTATGGGACTGTTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGTTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGCTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCTTATGGAAACACTTCTTTCCATAGATCCTGCTGATCGTGGATCTGCAGCCTCTGCTTTTAAAAGTAAGTTCTTTACAGTAAAGCCACTTCCTGGTGCTCCTTCAAGCTTGCCTAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGATGGTTCGGAACTTTAGAGGACCTCTTCTAG 1242 42.51 MGSSGVNFSALRIKKGPTNQCVCLVDALGNHTMRPCISSVVKIQAEELTKEDFNGVKWLVMRYGIYNLEVIHAAIQMAKEEGIFVSLDLASFEIGQGTYSNVYRARDLDKRKIVALKKVRFDNLEQESVRFMAREIHVLRRLDHPNIIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEPQVKCYMQQLLRGLDHCHSRGVLYRDIKGSNLLIDNSGILKIADFGLASFFYPHQIQPLTSRVVTLWYRPPELLLGATYYGTVVDLWSTGCILAELYVGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGLMETLLSIDPADRGSAASAFKSKFFTVKPLPGAPSSLPKYPPSKEFDAKVRDEEARRWFGTLEDLF* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21093926 21098316 - Vvi5g1148 Vvi5g1148 787290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1148 413 PANTHER F8L10.9 PROTEIN 42 404 - -
Vvi5g1148 413 SUPERFAMILY Protein kinase-like (PK-like) 93 373 IPR011009 -
Vvi5g1148 413 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Vvi5g1148 413 ProSiteProfiles Protein kinase domain profile. 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1148 413 Gene3D Phosphorylase Kinase; domain 1 107 170 - -
Vvi5g1148 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi5g1148 413 Pfam Protein kinase domain 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1148 413 PANTHER CELL DIVISION PROTEIN KINASE 42 404 - -
Vvi5g1148 413 Gene3D Transferase(Phosphotransferase) domain 1 171 408 - -
Vvi5g1148 413 Gene3D - 1 106 IPR029056 -
Vvi5g1148 413 SMART serkin_6 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1148 413 CDD STKc_CDK9_like 92 372 - -
Vvi5g1148 413 SUPERFAMILY Ribokinase-like 3 92 IPR029056 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76648 PF00069 Pkinase 1.00E-65 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1148 - - vvi:104879100 773.081