Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g1148 | ATGGGCTCTAGTGGAGTGAACTTTTCAGCATTGAGGATAAAGAAGGGACCAACAAATCAATGTGTTTGCCTGGTTGATGCATTGGGCAATCATACTATGCGGCCCTGTATCTCAAGTGTTGTTAAGATTCAGGCAGAGGAATTAACTAAAGAGGATTTTAACGGGGTAAAGTGGTTGGTAATGAGATATGGGATATATAATTTGGAAGTTATTCATGCTGCAATTCAGATGGCCAAAGAGGAGGGCATATTTGTATCCTTGGATTTGGCCAGTTTTGAGATTGGCCAGGGAACTTACAGTAATGTTTACAGGGCTCGTGATCTGGACAAACGGAAAATTGTTGCTTTGAAGAAAGTTAGGTTTGATAACCTGGAGCAAGAGAGTGTCCGCTTTATGGCAAGGGAAATTCATGTTCTGCGCAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTAGTCACATCAAGGATGTCTTGCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTAGCAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGTATCGTGATATAAAGGGTTCCAACCTTCTAATTGACAACAGTGGCATCTTGAAGATAGCAGACTTTGGTTTGGCAAGTTTTTTTTATCCCCATCAAATCCAGCCACTGACAAGCCGTGTGGTAACACTTTGGTACCGGCCACCTGAGCTCTTACTTGGAGCCACTTACTATGGGACTGTTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGTTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGCTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCTTATGGAAACACTTCTTTCCATAGATCCTGCTGATCGTGGATCTGCAGCCTCTGCTTTTAAAAGTAAGTTCTTTACAGTAAAGCCACTTCCTGGTGCTCCTTCAAGCTTGCCTAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGATGGTTCGGAACTTTAGAGGACCTCTTCTAG | 1242 | 42.51 | MGSSGVNFSALRIKKGPTNQCVCLVDALGNHTMRPCISSVVKIQAEELTKEDFNGVKWLVMRYGIYNLEVIHAAIQMAKEEGIFVSLDLASFEIGQGTYSNVYRARDLDKRKIVALKKVRFDNLEQESVRFMAREIHVLRRLDHPNIIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEPQVKCYMQQLLRGLDHCHSRGVLYRDIKGSNLLIDNSGILKIADFGLASFFYPHQIQPLTSRVVTLWYRPPELLLGATYYGTVVDLWSTGCILAELYVGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGLMETLLSIDPADRGSAASAFKSKFFTVKPLPGAPSSLPKYPPSKEFDAKVRDEEARRWFGTLEDLF* | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 21093926 | 21098316 | - | Vvi5g1148 | Vvi5g1148 | 787290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g1148 | 413 | PANTHER | F8L10.9 PROTEIN | 42 | 404 | - | - | |
Vvi5g1148 | 413 | SUPERFAMILY | Protein kinase-like (PK-like) | 93 | 373 | IPR011009 | - | |
Vvi5g1148 | 413 | ProSitePatterns | Protein kinases ATP-binding region signature. | 94 | 117 | IPR017441 | GO:0005524 | |
Vvi5g1148 | 413 | ProSiteProfiles | Protein kinase domain profile. | 88 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g1148 | 413 | Gene3D | Phosphorylase Kinase; domain 1 | 107 | 170 | - | - | |
Vvi5g1148 | 413 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi5g1148 | 413 | Pfam | Protein kinase domain | 93 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g1148 | 413 | PANTHER | CELL DIVISION PROTEIN KINASE | 42 | 404 | - | - | |
Vvi5g1148 | 413 | Gene3D | Transferase(Phosphotransferase) domain 1 | 171 | 408 | - | - | |
Vvi5g1148 | 413 | Gene3D | - | 1 | 106 | IPR029056 | - | |
Vvi5g1148 | 413 | SMART | serkin_6 | 93 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g1148 | 413 | CDD | STKc_CDK9_like | 92 | 372 | - | - | |
Vvi5g1148 | 413 | SUPERFAMILY | Ribokinase-like | 3 | 92 | IPR029056 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76648 | PF00069 | Pkinase | 1.00E-65 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g1148 | - | - | vvi:104879100 | 773.081 |