Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1151 ATGAAGGTAGAACTCATTTTCCATTGTCTTGTTCTTAGGGCCACAGGAGAAAAGTCATCCAGACTCCACGCTTCCATAGGTCACTGCCACTTTGCAGTGTCCAAAGCTCATCCAGAATTCGACAGAAAAATGGCTACACAGCAACACCCACCACCGACTCCAAACCTCCTCAGGAGACCTTTAATCAAGGTCTTCTTCGTTGCCATTGTATTCTGTGCCTGCTACTTTCTTGGCTCCTACAGCAATCCCAGTTCGACACTCTCCACAATTCAGGCCCACCCACAGCACTGTTTCCCCTCAAATGCCTCAACTCCTAAACACCCTTCACCTTCACTGGTTCTAGACTTTGAAGCTCACCACATTCTCCCTCTTCCCCAAGAAAGCTCACAAAGTGGGGGTTTCTTTGAATTATGCCCCAGCAATTTCACACATTACTGCCCATGTCAAGACCCTTCAAGAGCGAAGGAGTTCAATGTGACTAAGTTTTTCCATAGGGAGAGGCATTGCCCTGGGAGCCACCAGGCCTTGAGGTGCTTGGTGCCTAGGCCTAAAGGGTACAGGAGGCCATTTCCGTGGCCAAAAAGTAGAGACTACGCATGGTTCAACAACGTGCCTTTCCCAAAGTTGTCTGTGTACAAGAAATCCCAGAATTGGGTTCGAGTGGAAGGCGATCGGCTTGTTTTTCCAGGCGGTGGGACTTCGTTTCCAAAGGGGGTGAAGGACTATGTGGATGAGATTAGGCGGGTCGTGCCATTGAAGTCTGGGAACATAAGAACAGCTCTTGATGTTGGATGTGGGGTTGCAAGCTTTGGAGCCTCTCTAATGGATTATAACATCTTGACAATGTCAATTGCACCAATGGATATACATGAAGCTCAAGTACAGTTCGCCTTGGAAAGAGGACTTCCAGCCATGCTTGGTATTCTAAGCACCTACAGATTACCATACCCATCAAGATCTTTTGATATGGCACACTGCTCCAGATGCCTTGTGCCATGGACTGCTTACGATGGAGTATATCTGATGGAAATTGACCGAGTTTTGCGTCCTGGTGGCTACTGGGTAGTGTCTGGGCCACCAATAAGTTGGAAGTCTAGCTACAAGGGTTGGGAGAGAAAGGCTCAGGACTTGGAAAAGGAGCAAATCAGTTTAGAAGATCTTGCGAGGCGGCTATGCTGGAAAAAGATTGCAGAGAGGGGACCAATTGCAGTATGGAGAAAGCCCACTAATCATATCCACTGCATCCAAAAGTTGAAGGCTTGGAAGTCTCCTCATTTCTGTGCTGAAACTGACCCTGATGCGGGTTGGTATAAGGAGATGGATCCATGCATTACTCCTCTTCCAAAAGTGACGGACATCCGCAGTATATCTGGAGGTGCACTTGAAAGATGGCCTAAAATGTTGAATACTGCTCCACCCAGGATTAGAAATGGGGTTACTAGAGGAGCCACTGTCAATACCTTTAATAAAGACAATCAAATATGGATAAAAAGAGTTTCATACTACGGAAGTGTTCTCAAATCTCTTGGTGCAGGTAAATATAGAAATATCATGGATATGAATGCAGGCCTAGGTGGTTTTGCAGCTGCAATTTCTAAGCAACAAGTTTGGGTTATGAATGTTGTTCCTTTTGATGCACAAAACAACACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAAATGTGACATTCTTGATATTCTCTTTGAGATGTACCGAATTCTTCGTCCTGAAGGGGCTGCTATAATCAGAGATCACATTGACATCATTGTGAAAGTAAAAGGCATCACAGATCGAATGAGATGGAAAAGCAAAATTCTACACAGCGAGTATGGACCTTTCCATCCAGAGAAGATACTCTTTGTAGACAACTCTGAAGCCTGA 1977 45.52 MKVELIFHCLVLRATGEKSSRLHASIGHCHFAVSKAHPEFDRKMATQQHPPPTPNLLRRPLIKVFFVAIVFCACYFLGSYSNPSSTLSTIQAHPQHCFPSNASTPKHPSPSLVLDFEAHHILPLPQESSQSGGFFELCPSNFTHYCPCQDPSRAKEFNVTKFFHRERHCPGSHQALRCLVPRPKGYRRPFPWPKSRDYAWFNNVPFPKLSVYKKSQNWVRVEGDRLVFPGGGTSFPKGVKDYVDEIRRVVPLKSGNIRTALDVGCGVASFGASLMDYNILTMSIAPMDIHEAQVQFALERGLPAMLGILSTYRLPYPSRSFDMAHCSRCLVPWTAYDGVYLMEIDRVLRPGGYWVVSGPPISWKSSYKGWERKAQDLEKEQISLEDLARRLCWKKIAERGPIAVWRKPTNHIHCIQKLKAWKSPHFCAETDPDAGWYKEMDPCITPLPKVTDIRSISGGALERWPKMLNTAPPRIRNGVTRGATVNTFNKDNQIWIKRVSYYGSVLKSLGAGKYRNIMDMNAGLGGFAAAISKQQVWVMNVVPFDAQNNTLGIVYERGLIGTYMNWCEAFSTYPRTYDLIHAHGVFSMYMGKCDILDILFEMYRILRPEGAAIIRDHIDIIVKVKGITDRMRWKSKILHSEYGPFHPEKILFVDNSEA* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21119195 21124358 - Vvi5g1151 Vvi5g1151 787293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1151 658 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 431 619 IPR029063 -
Vvi5g1151 658 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 145 654 IPR004159 GO:0008168
Vvi5g1151 658 PANTHER METHYLTRANSFERASE PMT19-RELATED 56 655 - -
Vvi5g1151 658 Coils Coil 367 387 - -
Vvi5g1151 658 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 165 387 IPR029063 -
Vvi5g1151 658 Gene3D Vaccinia Virus protein VP39 233 402 IPR029063 -
Vvi5g1151 658 Gene3D Vaccinia Virus protein VP39 501 649 IPR029063 -
Vvi5g1151 658 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 56 655 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1151 - - - vvi:104879421 1293.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1151 . . . . . Bpe14g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029960 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2