Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1152 ATGGGAAAGGGTGAAAGCAGCAACACGAAGGCCACAATCATCTCGGCATCCTCCTTCCTCAGATCTGTGACTTTGCACGACTGGTGGCTGCTTAAGACAAACGCCAACCGCTTGGCCGTTGGAGGCTTCGCTACTCGAGAGAGACAAGGAATAAGAGTTTTCAGCTCTGGAGCAATTGCCAAGAGGCATGATGCCACCACTCTTGAAACAGCAGATGGCATAACTATTACCATTGTTGGTTTCTTAAACAAGTCTCGCACACATCAAAATGGCTTTCCATCTGAGGTTTGCAAACATTTCCTGTTTGGATTTCCATATCACTGGGAGGAGTATGCGGTTCAATGTTTTGTTGGAGAATCTACCAAAAGTGGTGTTTCAAAAAAACCTTCTGGTTGTGAAGAGTTCAACTTGCCTTCAACCAGTAGTGAAAATAATCTACTGCCTGCATCTTTGGATGAGCTCCCGGTGACTAGGGTTCGTGATCTTTTAATGTCCACTCTTGGAGATTCTAAAACACTAACAAATAGTATTTTTAGTGATATAGTGGGAAGAGTATCTAACCTTTCAAACATGAAAGGTAATAGCCCAACCACTGTGGATACTGAATTGGATAGAACTCCAAGGAATCATAAAAAGGCCGAGGTTGAGAAGTTCGAAGATGACAACAGCATCTTGGATGTGTCAGATATGAGAACTGAAGAATGTAAGAAAAATATTTGTCAATCTAGCGGGGTTATGAATGACTCTACCCCAAGTAGACGTGTTTCGACTAGAACCATGACAAGGTTGAAGAATTTAAAAAGCCAGCTGGAATGGAATCTTTCATCAAGCACTTCCAAGAAGCAAAAGACTCGGGAGAATTCTGAAAAACGCCTGTTGACAAATAGTAGTAATGATGTACTGAGAAGATCCAGTGGTAATGATTTCAAACATGCTAGAAAAGACATGAAAACTAATGGTCCAATAAAGACTATGGATTCTGATTTGGATAAATTTATTAAACATAAGATGGCAAAGGTTGAGCAGAAGCGCACAGATAACTGTGTATCCATGGATACCATGGATATTAGAAAAGAAGAATGTCAGAAATATTTTTGTCGATCAGAAGTGGGTATGCATGCCCTTTCCCCAGATAGGGGTGTTGCCACAAGAAGCATGGCTAGATTGAAGAATGTCAAAAACAACCCATGA 1191 40.97 MGKGESSNTKATIISASSFLRSVTLHDWWLLKTNANRLAVGGFATRERQGIRVFSSGAIAKRHDATTLETADGITITIVGFLNKSRTHQNGFPSEVCKHFLFGFPYHWEEYAVQCFVGESTKSGVSKKPSGCEEFNLPSTSSENNLLPASLDELPVTRVRDLLMSTLGDSKTLTNSIFSDIVGRVSNLSNMKGNSPTTVDTELDRTPRNHKKAEVEKFEDDNSILDVSDMRTEECKKNICQSSGVMNDSTPSRRVSTRTMTRLKNLKSQLEWNLSSSTSKKQKTRENSEKRLLTNSSNDVLRRSSGNDFKHARKDMKTNGPIKTMDSDLDKFIKHKMAKVEQKRTDNCVSMDTMDIRKEECQKYFCRSEVGMHALSPDRGVATRSMARLKNVKNNP* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21125136 21127612 + Vvi5g1152 Vvi5g1152 787294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1152 396 Pfam SANTA (SANT Associated) 23 111 IPR015216 -
Vvi5g1152 396 MobiDBLite consensus disorder prediction 268 323 - -
Vvi5g1152 396 MobiDBLite consensus disorder prediction 304 321 - -
Vvi5g1152 396 PANTHER INTERACTING FAMILY PROTEIN, PUTATIVE-RELATED 6 294 - -
Vvi5g1152 396 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 6 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1152 - - - vvi:104879423 793.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1152 . . . . . . . . . . Cma06g01637 . Car06g01392 . Sed12g0651 Cpe08g00091 . Bhi01g02650 Tan10g1252 Cmetu07g1677 . Hepe05g1258 . Lcy11g1201 . . . . . . . . . . . . . . Cme07g01869 . . . . . . . Bma06g01425 . Cmo06g01636 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013545 0 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14819 PF09133 SANTA 2.70E-28 No_clan Vvi TR