Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g116 ATGGGTGTCACAACTTTTACTCAAGAGTTTGTAACTCCGGTCTCTCCTGCTCGGATGTTCAAGGCGCTGGTCGTGGATTCCCATATCCTTGTCCCCAGGTTGGTGCCTGAATCAGTAAAGAGCATCGAGTTTGTTGAAGGTGATGGTGGGGCTGGAAGCATTACACAGACGAACTTCTCTGGTGATAGTGATTGCGAGTATTTGAAGTATAAGATCAATGCAGTGGACAAAGAGAAGCTAGAGTGCAGATACACTTTGATTGAAGGTGGTGTGCTTGGTGATCAGCTTGAATCGATTGTTTATGAGATGAAATTCGAGGAGTCTGGTGATGGAGGATGCATTTGCAAGACGAGGAGTGAGTATCACACTAAGGGGGAGTTTGAGATTAAGGAGGAGAGTATCAGAGAAGGGAAGGAAAAAGCCATGGGAGTGTATAAGCTGGTTGAGGCCTACCTTCTTGCTAACCCTGACGAGGAGTTGTGA 483 46.38 MGVTTFTQEFVTPVSPARMFKALVVDSHILVPRLVPESVKSIEFVEGDGGAGSITQTNFSGDSDCEYLKYKINAVDKEKLECRYTLIEGGVLGDQLESIVYEMKFEESGDGGCICKTRSEYHTKGEFEIKEESIREGKEKAMGVYKLVEAYLLANPDEEL* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1228359 1229010 + Vvi5g116 Vvi5g116 786258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g116 160 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 CDD Bet_v1-like 5 152 - -
Vvi5g116 160 Gene3D - 2 158 IPR023393 -
Vvi5g116 160 PANTHER - 1 158 - -
Vvi5g116 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g116 160 SUPERFAMILY Bet v1-like 2 157 - -
Vvi5g116 160 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Vvi5g116 160 PANTHER MAJOR ALLERGEN PRU AR 1-LIKE 1 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g116 - - - vvi:100263738 322.783
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g116 Blo01g00061 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00451 Cam06g0481 Cec06g0485 Cco06g0484 Clacu06g0468 Cmu06g0468 Cre06g1242 . . . . . Csa06g01768 . . . Blo07g00161 . . Bpe05g00824 . . . . . . . . . . . . Bhi12g01895 Tan06g2720 . Lac11g0898 Hepe03g0073 . Lcy12g0774 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145