Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1162 ATGGATCAACGCAGTACTTCTAATGATGGCCGAGCCCAGACCACATACATGGATGCTGATTTGTACACGGCTGCATCGAAAGGCAACATCAGCAAGCTGGAGCAGCTAGAAGCTTGTGATCTTGGCCGCCAACGGACCCCCAAAAGTAACACTATCCTTCATATTGCAGCTCAATTCGGTCAACTGGACTGTGTTAAACGGATCCTTGAATTGACTTCATTTTCATCTCTACTGAAGATAAATTTGAAAGGAGACACCCCACTTCACCTTGCAGCAAGAGAAGGGCATTTGACAGTCGTCGAAGCTCTAATTCAAGCTGCAAAACCTCCCAATGAGATTGAAAGTGGGGTGGGAGTAGATAAGACCATTCTGAGGATGGCCAATAAGGAGGGAGACACAGCCTTGCATGAAGCAGTGAGGTATCATCACCCTGAGGTGGTGAAATTATTGATTAAGGAAGACCCTCAGTTTACCTATGGTCCTAATATTTCTGGTGGAACGCCTATTCACATGGCGGTGGAGCGAGGACATGTAGACTTGGTGCAAATAATCATAGAAAACACTAGGACTTCACCAGCTTACAGTGGCATCTTGGGAAGAACTGCTTTGCATGCTGCTGTAATTCGCAACGACCAAGAAATAACAACCAAGTTGTTGGAATGGAAGCCATCTCTAACCGAAGAAGTGGACCAAAATGGGTGGTCTCCCCTTCACTGTGCTGCCTACTTTGGTTATACCACGATTGTGAGGCAATTACTAAACAAATCAGTTAAATCTGTAGCTTACCTCGGAATCAAACCTGGCATGCAAACCGCCCTTCACCTTGCAGCTATCCGTGGCCATAAAGACATAGTAGATCTGCTGCTGTCTTACTATCCAGATTGTTGCGAGCAGGTTGATGATAACGGCAAAAATGTTCTTCACTTTGCCATGATGAGAAAGCAAGATTATTATCCTAGGATGTTTTTACAAAATGATGGATTAAGAGTGAGAGGACTTTTAAATGAGAGAGATGCTCAAGGAGACACACCCCTCCACCTGCTTGCTTCTTACCTAATTGATGATGAAAATTTTGTATTGGACGATAAAGTGGATAAGATGGGGCTCAACAATGAAAACTTAACCCCCAAGGACATGGTTTCAAGAGCCACCGACAATGGGCTGCAAAAGAAATTAGTCATGGCTTGCTTCAACACAAGTAAGGAAGCGGGTATTGGACCTTTAAGTTGGGTGCCGAGGGACAGAGAGGTCCCAAGGGACAAAGAGGTCACGAGGGACAGAGAAGACAAAGGTAGTAGTGGAAGCAATTCCATCTCTACCTTGAAGAAAGTAGGTGAAACTCATTTAATTGTGACAGCACTGGTAGCAACTGTAACCTTTGCAGCTGGCTTCACCTTGCCTGGTGGTTACAATGAAAATGATGGCCTGGCAACCCTAGGAAAGAAAGAAGCTTTCAAAGCATTTGTTGTCGCGGATACTTTAGCCATGGTTTCTTCTGTATCCGCTGCATTTGTTTACTTTTTTATGGCTGGGTATGAAAAAGAGGAGCTTCTCCACAAACACTTACCTTGGGGCTTTTTTCTCACCATGTTTAGCATGGGAGCAATGGTGGTGGCATTCATGACTGGCATGTACGCTGTGCTACCACGTTTCTCTTGGCTTCCCATCCCTGTTTGTGTCCTCTGCTGCTGCTTTTTCCTCGTCTTCTATCATGTATTTAAACAATTTCAAAAAAGCTAG 1740 44.6 MDQRSTSNDGRAQTTYMDADLYTAASKGNISKLEQLEACDLGRQRTPKSNTILHIAAQFGQLDCVKRILELTSFSSLLKINLKGDTPLHLAAREGHLTVVEALIQAAKPPNEIESGVGVDKTILRMANKEGDTALHEAVRYHHPEVVKLLIKEDPQFTYGPNISGGTPIHMAVERGHVDLVQIIIENTRTSPAYSGILGRTALHAAVIRNDQEITTKLLEWKPSLTEEVDQNGWSPLHCAAYFGYTTIVRQLLNKSVKSVAYLGIKPGMQTALHLAAIRGHKDIVDLLLSYYPDCCEQVDDNGKNVLHFAMMRKQDYYPRMFLQNDGLRVRGLLNERDAQGDTPLHLLASYLIDDENFVLDDKVDKMGLNNENLTPKDMVSRATDNGLQKKLVMACFNTSKEAGIGPLSWVPRDREVPRDKEVTRDREDKGSSGSNSISTLKKVGETHLIVTALVATVTFAAGFTLPGGYNENDGLATLGKKEAFKAFVVADTLAMVSSVSAAFVYFFMAGYEKEELLHKHLPWGFFLTMFSMGAMVVAFMTGMYAVLPRFSWLPIPVCVLCCCFFLVFYHVFKQFQKS* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21243776 21245925 - Vvi5g1162 Vvi5g1162 787304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat profile. 130 152 IPR002110 GO:0005515
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat region circular profile. 83 105 - -
Vvi5g1162 579 Gene3D - 2 153 IPR036770 -
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat region circular profile. 268 290 - -
Vvi5g1162 579 Gene3D - 159 405 IPR036770 -
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat region circular profile. 164 187 - -
Vvi5g1162 579 Pfam Ankyrin repeat 131 151 IPR002110 GO:0005515
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat region circular profile. 130 152 - -
Vvi5g1162 579 SUPERFAMILY Ankyrin repeat 229 350 IPR036770 -
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat profile. 268 290 IPR002110 GO:0005515
Vvi5g1162 579 SMART ANK_2a 83 112 IPR002110 GO:0005515
Vvi5g1162 579 SMART ANK_2a 232 262 IPR002110 GO:0005515
Vvi5g1162 579 SMART ANK_2a 164 194 IPR002110 GO:0005515
Vvi5g1162 579 SMART ANK_2a 198 227 IPR002110 GO:0005515
Vvi5g1162 579 SMART ANK_2a 48 79 IPR002110 GO:0005515
Vvi5g1162 579 SMART ANK_2a 130 159 IPR002110 GO:0005515
Vvi5g1162 579 SMART ANK_2a 268 297 IPR002110 GO:0005515
Vvi5g1162 579 MobiDBLite consensus disorder prediction 408 439 - -
Vvi5g1162 579 Pfam Domain of unknown function 440 547 IPR026961 -
Vvi5g1162 579 Pfam Ankyrin repeats (3 copies) 270 313 IPR002110 GO:0005515
Vvi5g1162 579 Pfam Ankyrin repeats (3 copies) 21 107 IPR002110 GO:0005515
Vvi5g1162 579 Pfam Ankyrin repeats (3 copies) 169 255 IPR002110 GO:0005515
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat region circular profile. 232 257 - -
Vvi5g1162 579 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 122 570 - -
Vvi5g1162 579 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 46 108 - -
Vvi5g1162 579 MobiDBLite consensus disorder prediction 413 432 - -
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat profile. 164 187 IPR002110 GO:0005515
Vvi5g1162 579 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 122 570 - -
Vvi5g1162 579 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 46 108 - -
Vvi5g1162 579 SUPERFAMILY Ankyrin repeat 21 256 IPR036770 -
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat profile. 232 257 IPR002110 GO:0005515
Vvi5g1162 579 ProSiteProfiles Ankyrin repeat profile. 83 115 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1162 - - K15503 vvi:100244599 1122.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84