Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1163 ATGGCTCAACCCAGTACTTCTAATGCAGCACAAGACAACATCACAAGGCTGCAGCAGCTACAACCTGGTGATCTTGGCCGCCAATGGACCCCCAAAAGTAACACTATCCTCCATATTGCAGCTCAATTCGGTCGACTGGACTGTGTTGAATGGATCATTCAATTGACTTCATTTTCATCTCTACTGAAGATAAATTTGAAAGGAGACACCCCACTTCACCTTGCAGCAAGAGAAGGGCACTTGACAGTCGTACAAGCTCTAATTCAAGCTGCAAAAGCACTTCCCGGTGAGATTGAAAGTGGGGTAGGAGTAGATAAGGCCATTCTGAGGATGGCCAATAAGGAGGATGACACAGCCTTGCATGAAGCAGTAAGGTATCATCAACCTGAGGTGGTGAAATTTTTTATTGAGGAAGACCCTCAGTTTACCTATGGTCCTAATATTTCTGGTAACACTCCACTTTACATGGCTGCGGAGAGGGGATTTGACGACTTGGTGAACATAATCCTAGACAATCGTCGCAGTTCACCAGATCACAGGGGCCTCATGGGTAGAACGGCTTTGCATGCCGCCGTAATCTCCAAACACCCAGGTACCTATCTCTAA 606 46.53 MAQPSTSNAAQDNITRLQQLQPGDLGRQWTPKSNTILHIAAQFGRLDCVEWIIQLTSFSSLLKINLKGDTPLHLAAREGHLTVVQALIQAAKALPGEIESGVGVDKAILRMANKEDDTALHEAVRYHQPEVVKFFIEEDPQFTYGPNISGNTPLYMAAERGFDDLVNIILDNRRSSPDHRGLMGRTALHAAVISKHPGTYL* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21261669 21280197 - Vvi5g1163 Vvi5g1163 787305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1163 201 ProSiteProfiles Ankyrin repeat profile. 67 89 IPR002110 GO:0005515
Vvi5g1163 201 SUPERFAMILY Ankyrin repeat 29 197 IPR036770 -
Vvi5g1163 201 Pfam Ankyrin repeats (3 copies) 9 90 IPR002110 GO:0005515
Vvi5g1163 201 SMART ANK_2a 67 100 IPR002110 GO:0005515
Vvi5g1163 201 SMART ANK_2a 115 144 IPR002110 GO:0005515
Vvi5g1163 201 SMART ANK_2a 32 63 IPR002110 GO:0005515
Vvi5g1163 201 SMART ANK_2a 149 179 IPR002110 GO:0005515
Vvi5g1163 201 Gene3D - 5 101 IPR036770 -
Vvi5g1163 201 ProSiteProfiles Ankyrin repeat profile. 149 172 IPR002110 GO:0005515
Vvi5g1163 201 PANTHER ANKYRIN REPEAT PROTEIN 27 195 - -
Vvi5g1163 201 ProSiteProfiles Ankyrin repeat region circular profile. 149 172 - -
Vvi5g1163 201 Gene3D - 102 200 IPR036770 -
Vvi5g1163 201 PANTHER MOLTING PROTEIN MLT-4 27 195 - -
Vvi5g1163 201 ProSiteProfiles Ankyrin repeat region circular profile. 67 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1163 - - K15503 vvi:100244599 284.648
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .