Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1164 ATGGCCGATTCCACTACTTCTAGCCTTAACTTGAGTACAGAGTCCAATCAGGTTGTAGCTGAAGATGCTAGGAAAATCCAGATCGCCAACCAGGCTACAGCAGATGATGGTAACCTGACCCAGATAATATTCATGGATCCTAAATTGTACGTGGCAGCAGCACATGGTGACATCCATGTACTTGAGCGACATGATATTCGTGTCCAACGAACTCCAAAAAAGAACACAGTTCTCCATGTTGCAGCCCAATTCGGTCAAGCAGACTTCGTTGAAAAGATCCTTAAGTTGCCTTCTCTTTCATCACTCTTGCAACATCACAATGAGAAAGGTGACACTCCACTTCACCTTGCAGTAAGAGAAGGGCATTTGACAGTGGTGAAAAATCTGATTCACGGTGCCAAAAAACTTGGAGAAGAAGACACGGAAAGAGGGGCTGCAGCAGATTGGAAGGTGATGCTGAGGACGACAAATAACGAACAAGACACAGCCTTGCACGAGGCAGTGAGAAATCATCACCCTGAGGTGGTGAAGTTATTGATTCAGGAAGACCCCGACTTTACCTATGGTGCTAATACTGAAGGCAACACTCCTCTTTACATCGCTGCTGAGTGGGGATTCGGAGACTTGGTACAGATGATCCTAGACAATTGCTCTTCACCAGCTCATAGTGGCTTCAGTGGTCGAACGGCTTTGCATGCTGCGGTAATTCTCAAAGACCCAGCAATGACAAAGAAGATACTGGAATGGAAGCCTGCTTTAACTAAAGAATTAGACAAAAATGGGTGGTCTCCCCTTCACTTTGCAGCATATGTGGGTTGTCATCCAACAATAGTGACGCAATTGCTTGAGAAATCTGACACGTATGTTGTCTATCTAGGCGTCAAAAACCATGGAATTGGAAACAGGACAGCTCTTCACATTGCTGCTAGCCGAGGCCATGTGGAAATAGTGAAGCTGCTGGTGTCACACTTTCCAGATTGCTGCGAGAAAGTTGATGATGAGGGCAATAATGTTCTTCATCTGATAATGCCAGAAAAGAAAATATTTTTAACTTCGGTAATATTTGGTGGGCCTTTATCCATTTTTAGGTCCATTAGGGTTTTTATTGGTTGGAACCAAGGGAAAAAAAATAGAAAATCTTAA 1143 43.92 MADSTTSSLNLSTESNQVVAEDARKIQIANQATADDGNLTQIIFMDPKLYVAAAHGDIHVLERHDIRVQRTPKKNTVLHVAAQFGQADFVEKILKLPSLSSLLQHHNEKGDTPLHLAVREGHLTVVKNLIHGAKKLGEEDTERGAAADWKVMLRTTNNEQDTALHEAVRNHHPEVVKLLIQEDPDFTYGANTEGNTPLYIAAEWGFGDLVQMILDNCSSPAHSGFSGRTALHAAVILKDPAMTKKILEWKPALTKELDKNGWSPLHFAAYVGCHPTIVTQLLEKSDTYVVYLGVKNHGIGNRTALHIAASRGHVEIVKLLVSHFPDCCEKVDDEGNNVLHLIMPEKKIFLTSVIFGGPLSIFRSIRVFIGWNQGKKNRKS* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21344512 21350838 - Vvi5g1164 Vvi5g1164 787306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1164 380 Pfam Ankyrin repeats (3 copies) 159 216 IPR002110 GO:0005515
Vvi5g1164 380 Pfam Ankyrin repeats (3 copies) 295 341 IPR002110 GO:0005515
Vvi5g1164 380 Pfam Ankyrin repeats (3 copies) 49 134 IPR002110 GO:0005515
Vvi5g1164 380 SMART ANK_2a 226 255 IPR002110 GO:0005515
Vvi5g1164 380 SMART ANK_2a 73 104 IPR002110 GO:0005515
Vvi5g1164 380 SMART ANK_2a 300 329 IPR002110 GO:0005515
Vvi5g1164 380 SMART ANK_2a 260 292 IPR002110 GO:0005515
Vvi5g1164 380 SMART ANK_2a 193 222 IPR002110 GO:0005515
Vvi5g1164 380 SMART ANK_2a 159 188 IPR002110 GO:0005515
Vvi5g1164 380 SMART ANK_2a 109 138 IPR002110 GO:0005515
Vvi5g1164 380 Gene3D - 138 294 IPR036770 -
Vvi5g1164 380 Gene3D - 45 137 IPR036770 -
Vvi5g1164 380 ProSiteProfiles Ankyrin repeat region circular profile. 109 130 - -
Vvi5g1164 380 ProSiteProfiles Ankyrin repeat region circular profile. 300 323 - -
Vvi5g1164 380 ProSiteProfiles Ankyrin repeat profile. 159 191 IPR002110 GO:0005515
Vvi5g1164 380 PANTHER MOLTING PROTEIN MLT-4 45 342 - -
Vvi5g1164 380 PANTHER ANKYRIN REPEAT PROTEIN 45 342 - -
Vvi5g1164 380 ProSiteProfiles Ankyrin repeat profile. 300 323 IPR002110 GO:0005515
Vvi5g1164 380 ProSiteProfiles Ankyrin repeat profile. 109 141 IPR002110 GO:0005515
Vvi5g1164 380 ProSiteProfiles Ankyrin repeat region circular profile. 159 185 - -
Vvi5g1164 380 Gene3D - 295 353 IPR036770 -
Vvi5g1164 380 SUPERFAMILY Ankyrin repeat 49 323 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1164 - - - vvi:104879435 698.738
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84