Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1170 ATGTCGAACCAGATTGCAGCTGATGGCCAAACTGAGATCACCCACATGGATGCTGATTTGTACGAGGCTTTGTATGAAAGTGATATCAGAATCCTCGAGAGAAAGTACTCAGAAGCTCATCTTCAACTCCAACAAACCCCAAAAAGGAACACTGTCCTCCACATTGCAGCCCAGTTCGGTCAGCTGGCATCCGTAGAGTGGATCCTTCACTTTCATTCATGTTCACCTCTACTGCAGCAGCCCAATCGGAAAGGCGACACTCCACTTCACCTTGCTGCGAGAGAAGGCCATGGGGCAATTGTGAAAGCTCTCCTTGACGCCGCAAAAACACTTCACCAAGAGATCGAAAGTGGGGTTGGAACAGACAAGGCGATGTTGAGGATGACCAATAAGGAGAAAGACACAGCCTTGCATGAGGCGGTGCGGTATCATCATTCAGAGATAGTGGTGTCATTGATTGAGGAAGACCCTGAGTTTATCTACGGTGCAAATATTACAGGCTACACTCCTCTTTACATGGCTGCCGAGAGAGGATATGGAGACTTGGTGTCGAAGTTATTGGAATGGAAGCCAGATCTAACAAAAGAAGTTGATGAACATGGGTGGTCTCCCCTTCACTGTGCTGCATACTTGGGTTATACTAAAATTGCGGAGCAATTACTAGACAAATCATCAGATAAGTCTGTAACTTACCTTGCAATCAAAGATACCAAGAAAACAGCACTACACTTTGCAGCTAACCGCCACCATAGAGAGACAGTAAAGCTTCTGCTCTCACACTCTCCAGATTGTTGCGAGCAGGGGAAACTAAAAAAACAAATGAAGGAATGGGAGAAAGTTGTTGTCGGACCCTTCAGTTGGCAAGAGGCCATCAATAAAGACAATGGTAGTAGTAGTAAAAACAAAGACGTCAGAGAAGACGAAAGCATGGCTTTCACAGAGAGACTAGGTGAAACCCATTTGATAGTGGCAACACTTGTAGCAACTGTATCCTGTGCAGCGGGTTTCACCTTGCCCGGTGGTTACAATGACAGTGATGGCATGGCAAAATTAACAAAGCAAGTAGCTTTTAAAGCATTTATTGTGACGGACACATTAGCCATGATGCTCTCTGTATCTGCTGTGTTCGTTTATTTTGTTATGTCGTTGCATAAGGACGAGGACATCCTTGCAAAACAATTAGTCCTGGGCACTTGTCTCACTATGTCTAGTGTGGTACTAATGGTGGTTGCATTCGTGATGGGCCTATCCGCTGTGTTACCATTTTCCTCAGGGCTTCTACTCGTTGTTTGTACCTCCGGGTACTTGTTTCTCATTATTGTTGCCTTTACCTTAACTTGTCCATTTAGAATACGTTTGAAAAGGAAGATAAAAACAGTTCTCAAAATTACCATCAAATGA 1401 44.4 MSNQIAADGQTEITHMDADLYEALYESDIRILERKYSEAHLQLQQTPKRNTVLHIAAQFGQLASVEWILHFHSCSPLLQQPNRKGDTPLHLAAREGHGAIVKALLDAAKTLHQEIESGVGTDKAMLRMTNKEKDTALHEAVRYHHSEIVVSLIEEDPEFIYGANITGYTPLYMAAERGYGDLVSKLLEWKPDLTKEVDEHGWSPLHCAAYLGYTKIAEQLLDKSSDKSVTYLAIKDTKKTALHFAANRHHRETVKLLLSHSPDCCEQGKLKKQMKEWEKVVVGPFSWQEAINKDNGSSSKNKDVREDESMAFTERLGETHLIVATLVATVSCAAGFTLPGGYNDSDGMAKLTKQVAFKAFIVTDTLAMMLSVSAVFVYFVMSLHKDEDILAKQLVLGTCLTMSSVVLMVVAFVMGLSAVLPFSSGLLLVVCTSGYLFLIIVAFTLTCPFRIRLKRKIKTVLKITIK* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21582305 21584412 - Vvi5g1170 Vvi5g1170 787312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat profile. 237 263 IPR002110 GO:0005515
Vvi5g1170 466 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 124 187 - -
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat profile. 200 232 IPR002110 GO:0005515
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat region circular profile. 166 188 - -
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat region circular profile. 200 226 - -
Vvi5g1170 466 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 124 187 - -
Vvi5g1170 466 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 40 113 - -
Vvi5g1170 466 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 182 273 - -
Vvi5g1170 466 Gene3D - 3 155 IPR036770 -
Vvi5g1170 466 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 292 447 - -
Vvi5g1170 466 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 40 113 - -
Vvi5g1170 466 SMART ANK_2a 48 78 IPR002110 GO:0005515
Vvi5g1170 466 SMART ANK_2a 200 229 IPR002110 GO:0005515
Vvi5g1170 466 SMART ANK_2a 84 113 IPR002110 GO:0005515
Vvi5g1170 466 SMART ANK_2a 237 266 IPR002110 GO:0005515
Vvi5g1170 466 SMART ANK_2a 132 161 IPR002110 GO:0005515
Vvi5g1170 466 SMART ANK_2a 166 195 IPR002110 GO:0005515
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat region circular profile. 237 263 - -
Vvi5g1170 466 Pfam Ankyrin repeats (3 copies) 162 229 IPR002110 GO:0005515
Vvi5g1170 466 Pfam Ankyrin repeats (3 copies) 53 155 IPR002110 GO:0005515
Vvi5g1170 466 Pfam Domain of unknown function 314 419 IPR026961 -
Vvi5g1170 466 SUPERFAMILY Ankyrin repeat 20 265 IPR036770 -
Vvi5g1170 466 Gene3D - 156 315 IPR036770 -
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Vvi5g1170 466 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 182 273 - -
Vvi5g1170 466 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 292 447 - -
Vvi5g1170 466 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1170 - - - vvi:104879440 525.398
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84