Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1171 ATGGATCTTTCCACTTCCATCAACACTGCAGAATCACATACTCTTTACCTGGAACAGCTTGCAGCTCAAGACGGTAGCCAAACCGAGATCTCGAACCAGGCGGCAGATGCAGATGGCAGCCAAACTCCGATCACTTGCATGGATGCTGCTTTGTACGAGGCCGCAGCATATGGCAGGATCGATGTCCTGGAACAAATGTCAGAACATCATTTTGTGGTCCAATTAACCCCAAATAAGAATACCGTCCTCCACATTGCAGCCCAATTCGGTCAACTGGACTGTGTTCAGTATATCCTGGGGCTGCATTCATCTTCATCTCTCCTGCTTAAGCCCAATCTGAAGGGCGACACTCCACTTCACCATGCAGCGAGAGAAGGCCATTTGACAGTCGTGAAAGCACTCATTGATGCTGCGAAACGACTTCACCAAGAGATCGAGAGTGGGGTTGGAGGAGATAAGGCGATTATGAGGATGACAAATGAGGAGGAAAACACAGCCTTGCATGAGGCAGTGAGGTATCATCATTCAGAGGTTGTGAAGTCATTGACCGAGGAAGACCCCGAGTTTATTTATGGGGCTAATATTGCAGGCTACACTCTTCTTTACATGGCCGCCGAGAGAGGTTTTGAAGATTTGGTGAATTTAATCTTAGGAACTTGCACTTCACCATCTTACAGTGGCATGATGGGTAGAACGGCTTTACATGCTGCTGTAATTCGCAATGACCAAGAAATGACAGCGAGGTTATTGGAATGGAAGCCAGATCTGACAAAAGAAGTGGATGAGAATGGATGGTCTCCCCTTCACTGTGCTGCATACTTGGGTCATACTGCAATTGTGGAGCAATTACTAGACAAATCACCAGATAAATCTGTAACTTATCTTGGACTCAAGGACAGCAAGAAAACAGCACTTCACATTGCAGCTAACCGTGACCATCGAGATATAGTAAAGCTGCTGCTGTCACACTCCCCAGATTGTTGCGAGCAAGTGGATGATAAGGGAAATAATGTTCTTCACTATGCCATTATGAGCGAGCAGTTTTTGGCTGCTGGTGGTATCTTGGGTCGTAATAGTTTGTTAAGCGTGAGAAGACTTATAAATGAGAAAGACGCTAAAGGAGACACACCCCTCCACCTGCTTGCTTCTTACCAAGTTTATGATCCATTTTTGTCAGCGGACAATAGAGTGGATAAAATGGCACTCAACAAGGATAAGTTAACCGCCCTAGACATTATTTCAAGGGATAAAGTTAAGCCAAGAAGAATATTCAAGGAAGAAATTAGAAGACAATGGAGGGAATGGGAGAAAGTTGTTGTTGGACCCTTTAGTTGGCAGGAGGCTATCAATAAAGACAGTGGTAGTAGTAAAAGCGAAGACGTCGAAAAAGACGAAAGCATCTCTACCACAAAAAGAGAAGGTGAAACCCATTTGATAGTGGCAGCACTTGTAGCAACTGTAACCTTTGCTGCGGGTTTCACCTTGCCTGGTGGTTACAATGACAATGGCATGGCAATTTTAACAAAGAGAGCAGCTTTCAAAGCATTTATTGTGACAGACACCATGGCCGTGATCCTCTCTGTATCTGCTGTGTTTGTTTATTTTTTTATGTCGGTGCATGAGGACGAGGACTACCTTGACAAACACTTAATTATGGGCTTTTTTCTCACCGTGTTAAGCATGGGAGCAATGGTGGTTGCATTCATGACGGGCCTATACGCTGTGTTACCACTTTCCTCTGGCCTTCCAATCGTTACTTGTATCATCTGCTGCATCTTTCTTCTTGCCTTTTATTTTGTATTTAGACAACTTTTTAAATTTATAAAAGAATCTTAG 1836 44.06 MDLSTSINTAESHTLYLEQLAAQDGSQTEISNQAADADGSQTPITCMDAALYEAAAYGRIDVLEQMSEHHFVVQLTPNKNTVLHIAAQFGQLDCVQYILGLHSSSSLLLKPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGVGGDKAIMRMTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANIAGYTLLYMAAERGFEDLVNLILGTCTSPSYSGMMGRTALHAAVIRNDQEMTARLLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALHIAANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLINEKDAKGDTPLHLLASYQVYDPFLSADNRVDKMALNKDKLTALDIISRDKVKPRRIFKEEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSEDVEKDESISTTKREGETHLIVAALVATVTFAAGFTLPGGYNDNGMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMSVHEDEDYLDKHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVTCIICCIFLLAFYFVFRQLFKFIKES* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21620324 21622681 - Vvi5g1171 Vvi5g1171 787313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1171 611 ProSiteProfiles Ankyrin repeat region circular profile. 300 326 - -
Vvi5g1171 611 SMART ANK_2a 334 375 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 114 143 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 162 191 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 300 329 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 229 258 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 46 75 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 263 292 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vvi5g1171 611 SMART ANK_2a 196 225 IPR002110 GO:0005515
Vvi5g1171 611 Pfam Domain of unknown function 470 575 IPR026961 -
Vvi5g1171 611 Gene3D - 11 435 IPR036770 -
Vvi5g1171 611 ProSiteProfiles Ankyrin repeat profile. 300 326 IPR002110 GO:0005515
Vvi5g1171 611 ProSiteProfiles Ankyrin repeat profile. 114 146 IPR002110 GO:0005515
Vvi5g1171 611 ProSiteProfiles Ankyrin repeat region circular profile. 263 289 - -
Vvi5g1171 611 Pfam Ankyrin repeat 80 103 IPR002110 GO:0005515
Vvi5g1171 611 ProSiteProfiles Ankyrin repeat region circular profile. 114 136 - -
Vvi5g1171 611 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 154 601 - -
Vvi5g1171 611 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 68 143 - -
Vvi5g1171 611 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 154 601 - -
Vvi5g1171 611 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 68 143 - -
Vvi5g1171 611 SUPERFAMILY Ankyrin repeat 50 411 IPR036770 -
Vvi5g1171 611 Pfam Ankyrin repeats (3 copies) 298 347 IPR002110 GO:0005515
Vvi5g1171 611 Pfam Ankyrin repeats (3 copies) 110 185 IPR002110 GO:0005515
Vvi5g1171 611 Pfam Ankyrin repeats (3 copies) 201 292 IPR002110 GO:0005515
Vvi5g1171 611 ProSiteProfiles Ankyrin repeat profile. 263 295 IPR002110 GO:0005515
Vvi5g1171 611 MobiDBLite consensus disorder prediction 450 470 - -
Vvi5g1171 611 MobiDBLite consensus disorder prediction 453 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1171 - - - vvi:100257424 1188.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1171 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84