Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1174 ATGAATCTCTACCTCCAGTGGGATTTTCCGACAAGTTCGTTGATAAAGGCAAAGATCTTATTTTTAGGGCTTGATAATGCGGGAAAAACGACGTTGCTTCATATGTTGAAGGATGAGAGATTAGTGGATGTTGTGGTGTACCTGGTTGATGCGTATGACAAGGAAAGATTTGCCGAGTCAAAGAGGGAGTTGGATGCCCTCCTTTCTGATGAGTCACTGGCATATGTTCCATTTCTCATTCTGGGAAACAAGATAGACATACCCTACGCTGCCTCTGAGGATGAGTTGCGTTACCACCTGGGCCTGACCAACTTCACGACTGCTCGGGGCGGGACGGGTATGGGAATTTATCATACCCGCCCTACCCCGCCCCGTTTAATTTTTTAA 387 46.77 MNLYLQWDFPTSSLIKAKILFLGLDNAGKTTLLHMLKDERLVDVVVYLVDAYDKERFAESKRELDALLSDESLAYVPFLILGNKIDIPYAASEDELRYHLGLTNFTTARGGTGMGIYHTRPTPPRLIF* 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21672929 21673568 - Vvi5g1174 Vvi5g1174 787316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1174 128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 98 IPR027417 -
Vvi5g1174 128 PANTHER GTP-BINDING PROTEIN SAR1B-RELATED 42 122 - -
Vvi5g1174 128 PANTHER GTP-BINDING PROTEIN SAR1B-RELATED 5 42 - -
Vvi5g1174 128 SMART sar_sub_1 5 127 IPR006689 GO:0003924|GO:0005525
Vvi5g1174 128 PANTHER RE74312P 42 122 IPR006687 GO:0005525|GO:0006886
Vvi5g1174 128 PANTHER RE74312P 5 42 IPR006687 GO:0005525|GO:0006886
Vvi5g1174 128 PRINTS GTP-binding SAR1 protein signature 31 56 IPR006689 GO:0003924|GO:0005525
Vvi5g1174 128 PRINTS GTP-binding SAR1 protein signature 76 97 IPR006689 GO:0003924|GO:0005525
Vvi5g1174 128 ProSiteProfiles small GTPase SAR1 family profile. 1 128 - -
Vvi5g1174 128 Pfam ADP-ribosylation factor family 42 108 IPR006689 GO:0003924|GO:0005525
Vvi5g1174 128 Gene3D - 43 123 IPR027417 -
Vvi5g1174 128 Gene3D - 5 42 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1174 K07953 SAR1; GTP-binding protein SAR1 [EC:3.6.5.-] - thj:104816883 147.902
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00482 . . Bda13g00211 . Bpe13g00688 Bma02g00924 Bma06g01476 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031646 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1