Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1177 ATGACAAAGAAGATGCTGAAATGGAAACCTGCTTTAACTAAAGAATTGGATAAAAATGGGTGGTCTCCCCTTCACTTTGCTGCATATGTGGGTTGTCATCCAACAATAGTGAGGCAATTGCTAGAGAAATGTGACAGCAGTATTGTCCACCTAGGCGTCAAAGACCATGGAAACAAGACAGCTCTTCACATTGCAGCAAGCCGAGGCCATGTGGATGTAGTGAAAGAGCTGGTGTCACGCTTTCCAGATTGTTGCGAGAAAGTTGATGATGAGGGCAATAATGTTCTTCATTTTATAATGCCAAAAAAAATATTTGTAACTTCGGGTTTGTCAAATATTCCCCCGTTAAGGATGAGAGGACTCATGAACGAGAAGAATGCTGAAGGAAAGACGCCCCTCTACCTGTTTCACAATTCTCCCTTGTCTAAAGATGTCGACTACTTCCCACCTCCGAAGAGGATGTTGACGTGGATATTGGACACCTTCGCGAGATTAAGGAGACGGAGTCCAAGTTTCAGAGTTGGGATCAGACCCTTGGGTTCGCTAGAGGTCAAGGAAGACATGAATAGCAGCGAAAGCAAAGGAAGCAAAGAAATATCTGAAAACAAAGGAAGTGAAGAAAGTAAAGAAATATCTGAAATGAAGAAAACAATGAAAAGCCATATGATAGTGGCGGCACTCATAGCAACTGTAACCTTCACGGCAGGTTTCACACTGCCTGGTGGTTACATTCCGGACAAGGGCGTTACCCAGGGCATGGCAGTCTTATCGCTCCCAACAGATGGCACCCTGGGCAAGGACGGAGACATGGCAAGTGCAGCAACGGAAAGTTTCAGAAATTTTGTCATGGAAGATAGCATAGCCATGGTACTTTCTATGTGTGCAATTGGTATTTACTTCCTTGCCTCTTTCCCCATAGAAAATAAGAAGACCGTCCACGCATACTTATTGTACGGCTATGTTCTCACCTTGGCTGCGATGGCTGTAATGGTGACAGCATTCGTTGACGGGCTGCAAGCTGTGCTACATCCTTCTTCATCGCTTGAAGTTACCACCAAATACATGATTGTAGTCTTCTTGCTTTTCCTTTTTGTTCCAGCTTTTCCTTTATCGAATAAAATTATTTTTAACAATTACTAA 1140 43.42 MTKKMLKWKPALTKELDKNGWSPLHFAAYVGCHPTIVRQLLEKCDSSIVHLGVKDHGNKTALHIAASRGHVDVVKELVSRFPDCCEKVDDEGNNVLHFIMPKKIFVTSGLSNIPPLRMRGLMNEKNAEGKTPLYLFHNSPLSKDVDYFPPPKRMLTWILDTFARLRRRSPSFRVGIRPLGSLEVKEDMNSSESKGSKEISENKGSEESKEISEMKKTMKSHMIVAALIATVTFTAGFTLPGGYIPDKGVTQGMAVLSLPTDGTLGKDGDMASAATESFRNFVMEDSIAMVLSMCAIGIYFLASFPIENKKTVHAYLLYGYVLTLAAMAVMVTAFVDGLQAVLHPSSSLEVTTKYMIVVFLLFLFVPAFPLSNKIIFNNY* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21698252 21703725 - Vvi5g1177 Vvi5g1177 787319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1177 379 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 3 362 - -
Vvi5g1177 379 ProSiteProfiles Ankyrin repeat profile. 19 43 IPR002110 GO:0005515
Vvi5g1177 379 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3 362 - -
Vvi5g1177 379 SMART ANK_2a 19 50 IPR002110 GO:0005515
Vvi5g1177 379 SMART ANK_2a 57 86 IPR002110 GO:0005515
Vvi5g1177 379 SUPERFAMILY Ankyrin repeat 13 134 IPR036770 -
Vvi5g1177 379 Pfam Domain of unknown function 213 339 IPR026961 -
Vvi5g1177 379 ProSiteProfiles Ankyrin repeat region circular profile. 57 80 - -
Vvi5g1177 379 ProSiteProfiles Ankyrin repeat region circular profile. 19 43 - -
Vvi5g1177 379 Gene3D - 2 100 IPR036770 -
Vvi5g1177 379 MobiDBLite consensus disorder prediction 185 212 - -
Vvi5g1177 379 ProSiteProfiles Ankyrin repeat profile. 57 80 IPR002110 GO:0005515
Vvi5g1177 379 MobiDBLite consensus disorder prediction 187 212 - -
Vvi5g1177 379 Pfam Ankyrin repeats (3 copies) 24 98 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1177 - - - vvi:104879439 689.108
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .