Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1178 ATGAGGACTTTGGGCCAATTTTCAAGTCAAGCGGGTATAAAACTCAATTCTCCCATTAAAGAAAGCGACACTATGGCCCATCTGAAAGGGGACTCCCCCCTCCACCTTGCAGCGAGAGAAGGGCATCTAGAGGTCGTGAAGGCTATTATTCATGCTGCGAAAACAGTTTCCGAAAGAGATATTGAGAGTGGGATTGGAGTGGACAAGGCCATGCTGAGGATGACCAACAATGAGCATGACACAGCCTTGCATGAGGCAGTCCGGTATCATCATCTGGAGGTCGTGAAGTGGTTGAACGAGGAAGATCCCGAGTTTACATATGGTGCTAACTTTTCTGGTGGGACTCCTCTATACATGGCTGCTGAGAGAGGGTTTACAGACTTGGTGAAAATAATCATAGAGAACACTAATCGCAATCGACTGGCTCACACTGGCCCCATGGGTAGAACAGCTTTGCACGCAGCTGTGATTTGCCGTGACCCAATAATGGTAAAAGAAATTCTGAAATGGAAGCCAGATCTAACAAAAGAAGTGGATGAAAACGGGTGGTCTCCACTCCACTGCGCTGCATACTTGGGTTATGTTCCAATAGCGAGACAATTGCTTCATAAATCTGATAGGTCTGTAGTCTACCTAAGGGTAAAAAATGATGACAACAAGACAGCTCTTCATATTGCGGCCACCCGTGGAAACAGGATCACAGCAAAACTGCTGGTGTCATACTATCCAGATTGTTGTGAGCAAGTGGATATTAATGGCAATAATGCTCTTCACTTATTCATGATGCAAAAAAGATTTTTCATCAGAAGCTTGTTGAATATTCGCTGGATGAATGTGGGAGCACTTATAAATGAGAAGAATGTTGAAGGACAAACACCTCTCCATCTGCTTGCCCATTCCCAGGCGAGATCTGATTGCACTTTCATAAGAGACAAGAAAGTAGATAAGATGGCACTTAATAGCCAAAACTTGACTGCTGTGGACGTAATTTTACTGGCTGAGGATTTATTTGGACAAAAGGATCTTATCATACGAAGACTGAAACGTGCCAAAGCTAGAATCGGGCCTTTGTTGTGGCAGAAGGCTATGAACAAAGACGAGGATAAGAGCCAAAGCAAACGTAATAAAGGTTTAGACACCTCTTTCTTAAAGAAAGCAAGTGATAGCCATTTGCTGGTGGCCGCACTTGTCGCCACTGTATCCTTCGCAGCAGGTTTCACGCTACCCGGCGGTTATAAGGATAGTGACGGCATGGCCAAGTTAAGCAACAAGCCTGGTTTTAAAGCATTTGTTGTGTCAGATTCCCTGGCCTTGGTGCTCTCTGTGACTGCTGTATTGTGTCATTTCTATAATGCATTGGAGAAGAAAAAGGTCCACGTCACATATTTTCTAAGGTGGGCCTATTGGTTCACCAAATTGGGTGTAGGAGCAATGGTGGTAGCATTCTTTACCGGCTTGTACAGCGTACTGCCCCGTCACTCAGGGATTGCCATTTTTGTTTTGATCATCTGCATCTGCTGTTCAGTTTTGAGCATAACCTCTGGTAGGCCGAGAGTAAGAAAATATTTTTAG 1572 44.53 MRTLGQFSSQAGIKLNSPIKESDTMAHLKGDSPLHLAAREGHLEVVKAIIHAAKTVSERDIESGIGVDKAMLRMTNNEHDTALHEAVRYHHLEVVKWLNEEDPEFTYGANFSGGTPLYMAAERGFTDLVKIIIENTNRNRLAHTGPMGRTALHAAVICRDPIMVKEILKWKPDLTKEVDENGWSPLHCAAYLGYVPIARQLLHKSDRSVVYLRVKNDDNKTALHIAATRGNRITAKLLVSYYPDCCEQVDINGNNALHLFMMQKRFFIRSLLNIRWMNVGALINEKNVEGQTPLHLLAHSQARSDCTFIRDKKVDKMALNSQNLTAVDVILLAEDLFGQKDLIIRRLKRAKARIGPLLWQKAMNKDEDKSQSKRNKGLDTSFLKKASDSHLLVAALVATVSFAAGFTLPGGYKDSDGMAKLSNKPGFKAFVVSDSLALVLSVTAVLCHFYNALEKKKVHVTYFLRWAYWFTKLGVGAMVVAFFTGLYSVLPRHSGIAIFVLIICICCSVLSITSGRPRVRKYF* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21778405 21781126 + Vvi5g1178 Vvi5g1178 787320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1178 523 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vvi5g1178 523 SMART ANK_2a 289 326 IPR002110 GO:0005515
Vvi5g1178 523 SMART ANK_2a 181 211 IPR002110 GO:0005515
Vvi5g1178 523 SMART ANK_2a 112 140 IPR002110 GO:0005515
Vvi5g1178 523 SMART ANK_2a 29 58 IPR002110 GO:0005515
Vvi5g1178 523 SMART ANK_2a 147 176 IPR002110 GO:0005515
Vvi5g1178 523 SMART ANK_2a 218 247 IPR002110 GO:0005515
Vvi5g1178 523 SUPERFAMILY Ankyrin repeat 248 332 IPR036770 -
Vvi5g1178 523 Gene3D - 137 335 IPR036770 -
Vvi5g1178 523 SUPERFAMILY Ankyrin repeat 26 266 IPR036770 -
Vvi5g1178 523 Gene3D - 13 136 IPR036770 -
Vvi5g1178 523 ProSiteProfiles Ankyrin repeat region circular profile. 112 135 - -
Vvi5g1178 523 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27 509 - -
Vvi5g1178 523 ProSiteProfiles Ankyrin repeat profile. 29 61 IPR002110 GO:0005515
Vvi5g1178 523 Pfam Domain of unknown function 383 488 IPR026961 -
Vvi5g1178 523 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 27 509 - -
Vvi5g1178 523 Pfam Ankyrin repeats (3 copies) 164 245 IPR002110 GO:0005515
Vvi5g1178 523 Pfam Ankyrin repeats (3 copies) 25 100 IPR002110 GO:0005515
Vvi5g1178 523 ProSiteProfiles Ankyrin repeat region circular profile. 29 60 - -
Vvi5g1178 523 ProSiteProfiles Ankyrin repeat profile. 112 135 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1178 - - K15503 vvi:104879450 909.442
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84