Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1186 ATGGATCCATCCACCTCCAGTCATGCTTTAGAATTACAGAACCTTAACTCAGCTTCTATCCAATTAACACCCAATAAGAACACCGTCCTCCACATTGCAGCGCAATTCGGTCAACTGAAGTGCGTTGTATGGATCATTCAGCACTACTCCGCGGATTCGTCCCCACTGCAGAGGCCCAATCTGAAAGGGGACACCCCCCTCCACCTTGCAGGGAGAGAAGGGCATCTAGAGGTCGCGAAGGCTCTTATCCCAGATAACACCATGCTGAGGATGACCAACAATGAGAATGACACAGCCTTGCATGAGGCCGTCCGGTATAATCATTCGAAGGTGGTGAAGTTGTTGATCAAGGAAGATCCCGAGTTTGAATATGGTGCTAACTTTTCTGGTGGGACTCCTCTATACATGGCTGCTGAGAGAGGATCTAGAGACTTGGTGAAAATAATCATAGAGAGCACTAATCGCGATCTAACCAAAGAAGTAGATGAAAATGGGTGGTCTCCACTCCACTGCGCTGCATACTCGGGTTATGTTTCAATAGTGGCGCAATTACTTGATAAATCTGACGAGTCTGTAGTCTACCTAAGGGTCAAAAACTATGGCAACAAGACAGCTCTTCATATTGCAGCCACCCGTGGAAGGAAGCGCACAGCAAAACTGCTGGTGTCACGCTTTCCAGATTGTTGTGAACAAGTCGATATTAATGGAAATAATGTTCTTCACTTAATCATGATGCAAAGAAGATTTTTCAAACGCTTGATAAAGATTCCCTGGATGAATGTGGGAGCACTTATAAATGAGAAGAATGTTGAAGGACAAACGCCTCTGCATCTGCTTGCTGATTCCCAGCTGAGATTTCGTTCAGATTACATAAGGAACAAGAAAGTAGATAAGATGGCACTTACCAACCAAAACTTGACTGCTTTGGACGTAATTTCATTGGCCGAGGATTTAACTGGACGAAAGGGTGGTATCATACAAAGCCTGAAACAGTCCAAAGCTAGAGTCGGGCCTTTGTTGTGGCAGAAGACTATGAGAAAAGGCAAGAACAGCAGTAAAAAAGTACGTGATAAAGGTTCAGACATCTCTTTCTTAAGGAAAGTAAGTGACAGCCATCTGCTAGTGGCCACACTCGTAGCCACTGTATCCTTCGCAGCAGGTTTTACACTGCCCGGCGGGTATAATGATAGTGACGGCATGGCCATTTTAAGCAAAAAGGCAGCTTTTCAAGCATTTGTTGTGTCAGATTCCATGGCCCTGGGCCTCTCTGTGACTGCTGTATTGTGTCATTTTTGTACTGCACTGTCTGAGAAAGGGCTGCAGCTCGCAGTATTGTTAAAGTTCGCCTATTTGCTCACCAAGTTGGGTGTAGGAGCAATGGTGGTAGCATTCTTGACCGGCTTGTACGCCGTACTGCCACATCACTCAGGGATTGCGATTTTAACTGTGATCATCTGCGTCTGTTGTTTAGTTTTAAATTATGCACTGCTAGGCGAATATGAAAAGAATGTCGAAGCACGAGTTTCTATTTTGTTACATGTAAATAAGTATTAA 1554 44.66 MDPSTSSHALELQNLNSASIQLTPNKNTVLHIAAQFGQLKCVVWIIQHYSADSSPLQRPNLKGDTPLHLAGREGHLEVAKALIPDNTMLRMTNNENDTALHEAVRYNHSKVVKLLIKEDPEFEYGANFSGGTPLYMAAERGSRDLVKIIIESTNRDLTKEVDENGWSPLHCAAYSGYVSIVAQLLDKSDESVVYLRVKNYGNKTALHIAATRGRKRTAKLLVSRFPDCCEQVDINGNNVLHLIMMQRRFFKRLIKIPWMNVGALINEKNVEGQTPLHLLADSQLRFRSDYIRNKKVDKMALTNQNLTALDVISLAEDLTGRKGGIIQSLKQSKARVGPLLWQKTMRKGKNSSKKVRDKGSDISFLRKVSDSHLLVATLVATVSFAAGFTLPGGYNDSDGMAILSKKAAFQAFVVSDSMALGLSVTAVLCHFCTALSEKGLQLAVLLKFAYLLTKLGVGAMVVAFLTGLYAVLPHHSGIAILTVIICVCCLVLNYALLGEYEKNVEARVSILLHVNKY* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21880042 21882774 + Vvi5g1186 Vvi5g1186 787328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Vvi5g1186 517 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 157 493 - -
Vvi5g1186 517 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 87 154 - -
Vvi5g1186 517 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 25 86 - -
Vvi5g1186 517 Pfam Ankyrin repeats (3 copies) 30 118 IPR002110 GO:0005515
Vvi5g1186 517 Pfam Ankyrin repeats (3 copies) 127 187 IPR002110 GO:0005515
Vvi5g1186 517 SUPERFAMILY Ankyrin repeat 28 310 IPR036770 -
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat region circular profile. 62 83 - -
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat profile. 164 188 IPR002110 GO:0005515
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat region circular profile. 129 151 - -
Vvi5g1186 517 Gene3D - 156 322 IPR036770 -
Vvi5g1186 517 SMART ANK_2a 129 159 IPR002110 GO:0005515
Vvi5g1186 517 SMART ANK_2a 25 57 IPR002110 GO:0005515
Vvi5g1186 517 SMART ANK_2a 62 91 IPR002110 GO:0005515
Vvi5g1186 517 SMART ANK_2a 164 194 IPR002110 GO:0005515
Vvi5g1186 517 SMART ANK_2a 271 308 IPR002110 GO:0005515
Vvi5g1186 517 SMART ANK_2a 201 230 IPR002110 GO:0005515
Vvi5g1186 517 SMART ANK_2a 95 124 IPR002110 GO:0005515
Vvi5g1186 517 Pfam Domain of unknown function 365 471 IPR026961 -
Vvi5g1186 517 Pfam Ankyrin repeats (many copies) 204 241 IPR002110 GO:0005515
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat region circular profile. 164 188 - -
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat profile. 129 151 IPR002110 GO:0005515
Vvi5g1186 517 ProSiteProfiles Ankyrin repeat region circular profile. 95 117 - -
Vvi5g1186 517 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 87 154 - -
Vvi5g1186 517 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 25 86 - -
Vvi5g1186 517 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 157 493 - -
Vvi5g1186 517 Gene3D - 10 155 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1186 - - K15503 vvi:104879451 951.814
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84