Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1189 ATGCATGTGCTTCGATTTACTCGAGCTTACCTCCGGCCCTCCATTATTCTTCTGCAATCCTCTTCTTCCTTTTCTTCTTATTCTTCTTCAGCTGCTGCGGTTGAGGCGGAGAGGGCCATCAGAGATGGCCCCAGGAACGACTGGACCAGACCCGAGATCAAGTCCATTTACGACTCCCCCCTTCTCGATCTCCTCTTCCATGGGGCTCAAGTTCACAGACATGCTCATAACTTTAGGGAAGTGCAGCAGTGTACTCTTCTCTCTGTTAAAACAGGTGGATGTAGTGAGGATTGTTCATATTGTCCTCAGTCCTCCAGGTATAGCACTGGAGTAAAGGCCCAAAGGCTTATGAACAAGGATGCTGTTCTGCAGGCAGCACAAAAGGCAAAGGAAGCTGGCAGCACACGCTTTTGCATGGGTGCTGCATGGAGAGACACAGTAGGAAGGAAAACCAACTTCAATCAGATACTTGAATATGTTAAAGAAATAAGAGATATGGGAATGGAGGTCTGCTGCACCTTGGGGATGCTAGAGAAGCAGCAAGCTATAGAACTTAAGAAGGCGGGTCTGACAGCATATAACCATAATCTTGATACCTCAAGAGAGTATTACCCCAATATCATTAGAACAAGAAGTTATGATGAACGCTTGGAAACTCTTCAGCTTGTCCGTGAAGCAGGAATCAACGTCTGTTCAGGAGGAATCATTGGGCTTGGAGAAGCAGAAGAGGATAGAGTTGGTTTGTTGCATACATTGGCAACACTCCCTACACACCCAGAGAGTGTTCCCATCAATGCACTCCTTGCAGTGAAAGGCACGCCTCTTGAAGATCAGAAGCCAGTTGAAATATGGGAGATGGTCCGGATGATTGCAACAGCCCGGATTGTGATGCCTAAGGCAATGGTCAGGTTGTCAGCTGGTAGAGTTCGGTTCTCAGTCCCCGAGCAGGCATTGTGCTTTCTTGCAGGTGCAAATTCAATCTTCACTGGTGACAAGCTGTTGACAACTCCTAACAATGATTTCGATGCTGATCAACAAATGTTCAAGCTGCTTGGGCTGATTCCAAAAGCCCCCAGTTTTGATGAGGATGTGGCGAAAACTTCTGAAGCAGAGAACTGTGAGCAAGCTGTTTCTGGTTCAGGTTAA 1146 47.03 MHVLRFTRAYLRPSIILLQSSSSFSSYSSSAAAVEAERAIRDGPRNDWTRPEIKSIYDSPLLDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYSTGVKAQRLMNKDAVLQAAQKAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRDMGMEVCCTLGMLEKQQAIELKKAGLTAYNHNLDTSREYYPNIIRTRSYDERLETLQLVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFTGDKLLTTPNNDFDADQQMFKLLGLIPKAPSFDEDVAKTSEAENCEQAVSGSG* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21911992 21923514 + Vvi5g1189 Vvi5g1189 787331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1189 381 Pfam Radical SAM superfamily 90 249 IPR007197 GO:0003824|GO:0051536
Vvi5g1189 381 PANTHER BIOTIN SYNTHASE 22 377 IPR002684 GO:0004076|GO:0009102
Vvi5g1189 381 SMART BATS_2 263 355 IPR010722 -
Vvi5g1189 381 Hamap Biotin synthase [bioB]. 46 356 IPR002684 GO:0004076|GO:0009102
Vvi5g1189 381 SFLD biotin synthase 44 359 IPR024177 -
Vvi5g1189 381 SUPERFAMILY Radical SAM enzymes 46 356 - -
Vvi5g1189 381 SFLD Radical SAM 44 359 IPR007197 GO:0003824|GO:0051536
Vvi5g1189 381 Gene3D Aldolase class I 45 357 IPR013785 -
Vvi5g1189 381 SMART MiaB 84 292 IPR006638 GO:0003824|GO:0051536
Vvi5g1189 381 ProSiteProfiles Radical SAM core domain profile. 79 308 IPR007197 GO:0003824|GO:0051536
Vvi5g1189 381 PIRSF Biotin_synth 29 361 IPR024177 -
Vvi5g1189 381 TIGRFAM bioB: biotin synthase 55 353 IPR002684 GO:0004076|GO:0009102
Vvi5g1189 381 Pfam Biotin and Thiamin Synthesis associated domain 263 353 IPR010722 -
Vvi5g1189 381 CDD Radical_SAM 91 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1189 K01012 bioB; biotin synthase [EC:2.8.1.6] - vvi:100255986 736.873
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31