Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1190 ATGGAGGAGGTTCTCGAGAGCAAAGACTTCTCATTTCCAAAGCAGGAAGAGAATATCCTCGAGTTATGGTCCGAAATCAAGGCCTTCGAGACCCAGTTGAAGCGCACCGAAAACCTGCCCGAGTACGTCTTCTACGACGGCCCTCCCTTCGCCACTGGCCTCCCCCACTATGGCCACATCCTTGCCGGGACCATCAAGGACATTGTGACGAGGTACCAGAGCATGACCGGCCACCACGTGACCCGACGCTTCGGATGGGACTGCCATGGATTGCCGATGGGAATTGATAAGTACAATGAGGAATGTAGGAGCATTGTGACTAGGTACGTTGAGGAGTGGGAGAAGATCATTACACGAACGGGTCGGTGGATTGACTTTAGGAATGATTACAAGACCATGGATTTAAAGTTTATGGAGAGTGTGTGGTGGGTTTTTGCTCAGCTATTTGAGAAGGGCCTTGTGTACAGAGGTTTCAAGGTTATGCCATACAGCACTGGTTGCAAGACACCGCTGTCTAATTTTGAAGCCAACTCGAACTATAAGGATGTACCCGACCCCGAACTGATTGTGTCCTTCCCAATAGTTGACGATCCAGATAAAGCAGCATTTCTAGCATGGACAACAACACCATGGACCCTCCCTAGTAATCTTGCCTTGTGTGTCAATGCAAATTTTGTCTATGTAAAGGTGCGCAATAAGTACTCAGGGAAAGTCTATGTGGTTGCTGAATCTCGATTGTCAGAGCTACCTACTGAGAAGCCAAAACAAGTAGAGTTTGAAGTGGTTGAGAAAATTTTGGGGGCTTCACTGGTGGGAAGGAAGTATGAGCCATTATTCAATTATTTCATGGAGTTTTCTGATGCGGCATTCAGAGTTCTTTCGGACAATTATGTAACTGATGATAGTGGGACTGGAATTGTTCATTGTGCTCCTGCATTTGGTGAAGATGATTACCGGGTTTGCGTTGAAAATCAAATAATCGATAAGGGAGAAGATCTAATTGTAGCAGTTGATGATGATGGCTGCTTTACTGGGAGGATTACTGACTTTAGTGGGCGTTATGTGAAGGATGCAGATAAAGACATTATCGAAGCAATAAAGAGAAAAGGCAGGCTCATCAAATCTGGCAGATTTACGCATTCTTATCCGTTTTGTTGGAGATCTGATACCCCTCTTATTTATAGAGCTGTTCCGAGCTGGTTTGTCAAAGTGGAAAACTTGAAGGAGCAATTGCTAGAAAACAACAAACAGACATATTGGGTTCCTGATTTTGTGAAGGAAAAACGCTTCCACAATTGGCTGGAAAATGCAAGAGACTGGGCTATCAGTCGAAGTAGATTCTGGGGTACTCCTCTTCCTCTATGGATTAGTGAGGATGGTGAAGAAAAAATAGTTATGGATTCCATCGAGAAACTAGAAAAGCTCTCTGGTGTGAAGGTGACTGATCTGCATCGTCACAAGATTGATCATATCACAATTCCTTCTAGTCGTGGTCCTGAATTCGGTGTGCTTCGACGTGTAGATGATGTGTTTGATTGCTGGTTTGAGAGCGGGTCCATGCCTTATGCTTATATTCATTATCCATTTGAGAATTTTGAACTTTTTGAAAATAATTTCCCTGGGCATTTTGTGGCTGAGGGGCTAGATCAAACTCGTGGATGGTTCTATACTCTCATGGTGTTGTCTACTGCATTATTTGGAAAACCTGCATTTAGGAATCTTATTTGCAATGGACTTGTCCTGGCTGAGGATGGAAAAAAAATGAGTAAAAGATTGAAGAACTATCCTTCACCTACAGAAGTCATTGATGAATATGGGGCTGATGCATTGCGGTTATACATTATCAATTCTCCAGTTGTGCGTGCAGAGCCTTTACGTTTCAAAAAAGAAGGAGTTCATGGTGTTGTCAAGGGGGTCTTTCTCCCTTGGTATAATGCATACAGGTTCCTTGTACAGAATGCAAGGAGACTTGAGGTTGAGGGGGTTGGACCATTCATTCCTATTGATGGGGTTACTCTTCAGAAATCATCTAATGTGCTTGATCAATGGATCAATTCAGCCACTCAGAGCCTTGTTCATTTTGTCCGCCAAGAAATGGATGCATATCGACTTTACACGGTGGTTCCTTATCTTGTGAAATTCCTTGACTACCTCACAAATACATATGTGCGGTTCAACCGTAAGAGACTTAAAGGCCGTACAGGAGAAGGCGACTGCCGGACAGCTTTGTCAACTCTTTACTATGTGCTTTTAACTTCGTGCAAAGTAATGGCTCCATTCACACCGTTCTTCACTGAAGTTCTTTATCAAAATTTACGGAAAGTTTCCAATGGATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGAGAGGAGAACGAATTGAACAAAGTGTTGCAAGGATGACAACTATAATTGATCTTGCTCGCAATATTCGTGAGCGTCACAATAAGCCCGTGAAAACACCACTCAGGGAGATGGTAGTTGTTCATCCAGACCAAGAATTTCTTGACGACATCGCTGGAAAGCTAAAAGAGTATGTGCTGGAGGAACTCAATATTAGATCTCTTGTCCCCTGCAATGATCCTTTGAAATATGCTTCTTTACGCGCAGAACCTGATTTCAGCGTATTAGGTAAGCGTCTGGGGAAATCGATGGGAGTTGTTGCCAAGGAAGTCAAAGCAATGTCCCAGGAAGATATTTTGGCTTTTGAAAAGGCTGGAGAAGTTACAATTTCTAACCATTGTTTGAAGCTGACTGATATTAAGGTTTTTCGGGATTTCAAACGTCCTGAAAATATGACTGCAGAGGAGATTGATGCATCAGGAGATGGTGATGTTGTGGTGATTCTGGATTTGCGACCTGATGAGTCATTGTTTGAGGCGGGGATTGCTCGTGAGGTCGTTAATAGAATCCAGAAATTACGGAAGAAGGCTGCCCTTGAACCTACCGACATGGTTGAGGTTTATTTTGAATCTTTGGATGAAGATTTATCAGCTATGCAACAAGTTTTAGATTCACAGGAAGTCTACATTAGAGATGCACTTGGTTCTCCTTTGCTTCCTTCCTCCATGATTCAGCCGCATACTGTCATCCTTTGCGAGGAGAGTTTCCATGGTGTCTCTAAATTTGATTTTGTTATTAGGTTGGCAAGGCCAACATTAGTATTCAACACGAATGCTGTTCTTGCTTTATATTCAGTTGTTGCAGGAAACACAAAGTTTGCACAAGGTTTGCAGGCTTACTTGTTTTCAAGGGATCATTATAACTTGAAGTCAGAGTTTCAACTTGGAAATTCCAAGATTAAGGTTGATTGCATTGAAAATCAGCCAGCAGTGGATGTGGTATTGGGAAAGCATGTACTTTTGACGGTCGGCGATTACTATTCGAGTGAGAAAACCGAATGA 3420 42.92 MEEVLESKDFSFPKQEENILELWSEIKAFETQLKRTENLPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPMGIDKYNEECRSIVTRYVEEWEKIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLFEKGLVYRGFKVMPYSTGCKTPLSNFEANSNYKDVPDPELIVSFPIVDDPDKAAFLAWTTTPWTLPSNLALCVNANFVYVKVRNKYSGKVYVVAESRLSELPTEKPKQVEFEVVEKILGASLVGRKYEPLFNYFMEFSDAAFRVLSDNYVTDDSGTGIVHCAPAFGEDDYRVCVENQIIDKGEDLIVAVDDDGCFTGRITDFSGRYVKDADKDIIEAIKRKGRLIKSGRFTHSYPFCWRSDTPLIYRAVPSWFVKVENLKEQLLENNKQTYWVPDFVKEKRFHNWLENARDWAISRSRFWGTPLPLWISEDGEEKIVMDSIEKLEKLSGVKVTDLHRHKIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENFELFENNFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKRLKNYPSPTEVIDEYGADALRLYIINSPVVRAEPLRFKKEGVHGVVKGVFLPWYNAYRFLVQNARRLEVEGVGPFIPIDGVTLQKSSNVLDQWINSATQSLVHFVRQEMDAYRLYTVVPYLVKFLDYLTNTYVRFNRKRLKGRTGEGDCRTALSTLYYVLLTSCKVMAPFTPFFTEVLYQNLRKVSNGSEESIHYCSFPQEEGQRGERIEQSVARMTTIIDLARNIRERHNKPVKTPLREMVVVHPDQEFLDDIAGKLKEYVLEELNIRSLVPCNDPLKYASLRAEPDFSVLGKRLGKSMGVVAKEVKAMSQEDILAFEKAGEVTISNHCLKLTDIKVFRDFKRPENMTAEEIDASGDGDVVVILDLRPDESLFEAGIAREVVNRIQKLRKKAALEPTDMVEVYFESLDEDLSAMQQVLDSQEVYIRDALGSPLLPSSMIQPHTVILCEESFHGVSKFDFVIRLARPTLVFNTNAVLALYSVVAGNTKFAQGLQAYLFSRDHYNLKSEFQLGNSKIKVDCIENQPAVDVVLGKHVLLTVGDYYSSEKTE* 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21924401 21956033 - Vvi5g1190 Vvi5g1190 787332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1190 1139 CDD Anticodon_Ia_Ile_ABEc 627 814 IPR033709 GO:0000049
Vvi5g1190 1139 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Vvi5g1190 1139 PRINTS Isoleucyl-tRNA synthetase signature 204 227 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Vvi5g1190 1139 PRINTS Isoleucyl-tRNA synthetase signature 380 395 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Vvi5g1190 1139 PRINTS Isoleucyl-tRNA synthetase signature 506 519 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Vvi5g1190 1139 PRINTS Isoleucyl-tRNA synthetase signature 546 555 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Vvi5g1190 1139 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g1190 1139 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 182 382 IPR009008 GO:0002161|GO:0006418
Vvi5g1190 1139 Gene3D HUPs 4 190 IPR014729 -
Vvi5g1190 1139 Gene3D HUPs 349 624 IPR014729 -
Vvi5g1190 1139 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 642 890 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g1190 1139 SUPERFAMILY Nucleotidylyl transferase 10 636 - -
Vvi5g1190 1139 Pfam Domain of unknown function (DUF5915) 850 1016 - -
Vvi5g1190 1139 Pfam Anticodon-binding domain of tRNA ligase 681 830 IPR013155 GO:0004812|GO:0006418
Vvi5g1190 1139 TIGRFAM ileS: isoleucine--tRNA ligase 8 841 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Vvi5g1190 1139 CDD IleRS_core 40 627 - -
Vvi5g1190 1139 Pfam tRNA synthetases class I (I, L, M and V) 19 623 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g1190 1139 PANTHER BNAUNNG00270D PROTEIN 1 1064 - -
Vvi5g1190 1139 Gene3D - 629 821 - -
Vvi5g1190 1139 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1064 IPR023586 GO:0004822
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1190 K01870 IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5] - vvi:100250847 2257.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007512 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 0 1 1 36