Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1191 ATGGCTGAAGCAGCTCCCAAATCCATTTATGATTTCACTGTCAAGGATATTCGCGGGAACGACGTGAGTCTGAGCGATTACAATGGGAAGGTTCTTCTGATAGTGAATGTTGCATCAAAATGCGGTCTAACACATTCCAACTACAAGGAATTGAATGTTTTATATGAAAAATACAAAAGCCAAGGGTTTGAGATTTTGGCATTTCCTTGCAACCAGTTTCTAGGACAAGAACCAGGAAGTAATGAGGAAATTCTGGAAGCTGCATGCACCATGTTCAAAGCTGAGTTCCCGATCTTTGATAAGGTTGAGGTGAATGGCAAGAACACGGCACCCCTCTACAAGTTCTTAAAGTTGCAGAAAGGTGGGTTATTTGGTGATGGCATCAAATGGAATTTCACAAAGTTTCTGGTGGACAAAGAAGGGAAGGTTGTGGACAGATATGCTCCTACCACATCACCTCTTAAAATTGAGGAAGACATCCAAAATCTGCTGGGTTCAGCCTGA 504 42.26 MAEAAPKSIYDFTVKDIRGNDVSLSDYNGKVLLIVNVASKCGLTHSNYKELNVLYEKYKSQGFEILAFPCNQFLGQEPGSNEEILEAACTMFKAEFPIFDKVEVNGKNTAPLYKFLKLQKGGLFGDGIKWNFTKFLVDKEGKVVDRYAPTTSPLKIEEDIQNLLGSA* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21967316 21971056 + Vvi5g1191 Vvi5g1191 787333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1191 167 Pfam Glutathione peroxidase 9 117 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 ProSitePatterns Glutathione peroxidases signature 2. 66 73 IPR029760 -
Vvi5g1191 167 PANTHER GLUTATHIONE PEROXIDASE 3 166 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 CDD GSH_Peroxidase 8 160 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 ProSitePatterns Glutathione peroxidases active site. 29 44 IPR029759 -
Vvi5g1191 167 PANTHER GLUTATHIONE PEROXIDASE 3 166 - -
Vvi5g1191 167 ProSiteProfiles Thioredoxin domain profile. 3 165 IPR013766 -
Vvi5g1191 167 PIRSF Glutathion_perox 1 167 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 Gene3D Glutaredoxin 2 166 - -
Vvi5g1191 167 PRINTS Glutathione peroxidase family signature 27 44 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 PRINTS Glutathione peroxidase family signature 63 79 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 PRINTS Glutathione peroxidase family signature 128 137 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 ProSiteProfiles Glutathione peroxidase profile. 1 167 IPR000889 GO:0004602|GO:0006979
Vvi5g1191 167 SUPERFAMILY Thioredoxin-like 8 165 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1191 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - vvi:100245705 340.117
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1191 . . . . . Bpe14g01042 . . . . Cma06g01662 . Car06g01405 . . . . . . . . . . . . . . . . . . Cone14ag0577 . . . . . . Cme07g01902 . Blo07g00091 Bda11g00464 . . Bpe13g00735 . Bma06g01422 . Cmo06g01657 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198