Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1195 ATGTTGCATCGCCATCAGCCTAATTATACCATCTTAAAGGAAGAAGATATACATCAGCATCAGGAAGATGATATTGCAAGAGTAGCTGCTGTTCTTTCAATAGCAAGTGTTTCAGCGAGCATCCTGCTCCGCCACTACCATTGGAGTGTTAGTAAAGTCAATGATGAATGGTTTGCTGATGAAAGTAGAGTCCGGAAAGCTGTTGGCTTATTGGAAGAACCACTTGTTCGATATCCCAATGCTAAAGAACTGACTTGTGGGATCTGTTTTGAAACCTATCCTCGTGATATGATACAATCAGCTGCTTGTGGTCATCCATTTTGTAGCACATGCTGGGAAGGTTATATTAGCACATCAATCAATGATGGTCCTGGTTGTTTGATGTTAAGATGCCCTGATCCATCTTGCCGAGCTGCTGTGGGCCAAGACATGATCAATCTCTTGGCATCTGATGAAGACAACGAGAAGTATTCTCGTTACCTTCTTAGATCATATATCGAAGACAATAGGAAGACCAAATGGTGTCCTGCCCCAGGTTGTGAGTATGCTGTGGAGTTCGTTGCTGGTAGTGGGAGCTATGATGTAGCCTGCCAGTGCTCATACGGATTTTGTTGGAATTGTACAGAGGAAGCTCATCGTCCAGTGGACTGTAGCACTGTGGCCAAGTGGATTTTGAAGAACAGCGCTGAATCTGAAAACATGAATTGGATACTAGCTAATTCGAAGCCTTGTCCGAAGTGTAAGCGTCCAATTGAAAAAAACCAAGGGTGTATGCATATTACATGCACACCACCCTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAGAGGACGGGTGGCTTTTACGCATGTAATCGATATGAAGCAGCAAAGCAAGAGGGAGTGTATGATGAAACTGAGAGAAGACGGGAGATGGCGAAAAATTCTTTAGAACGATACACTCATTATTATGAACGGTGGGCGACCAACCAATCGTCAAGGCAAAAAGCTCTTGCAGATTTACATCAAATGCAAAACGTGAATATTGAGAAGCTCAGTGACAAACAGTGCCAACCTGAATCACAGCTCAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAATGCAGACGGGTGCTGAAATGGACATATGCATATGGTTACTACTTACCCGAGCATGAGCTTCCCAGGAGACAATTTTTTGAGTACTTGCAAGGTGAGGCGGAGTCGGGTTTGGAAAGGCTTCATCAATGTGCAGAGAAGGAATTACAAACATACCTCAATGTTGATGGTCCATCAGCAGATTTCAATGACTTCCGCACAAAGCTAGCTGGACTGACAAGTGTAACACGGAATTACTTCGAGAACCTGGTCAGAGCATTGGAGAATGGGCTGTCAGATGTAGACTCTTATGGGGCTTGTAGCAGGACGACAAGTTCAAAGAGCATGGGAGGCACCAACGATTCAAGTCGATGGTATTGTGAACACTGTGCTACTGCTAATGCCAAGTCTGCCTACACATGCCAGATGTGCCACCAGCGACGGGCCTAA 1551 44.75 MLHRHQPNYTILKEEDIHQHQEDDIARVAAVLSIASVSASILLRHYHWSVSKVNDEWFADESRVRKAVGLLEEPLVRYPNAKELTCGICFETYPRDMIQSAACGHPFCSTCWEGYISTSINDGPGCLMLRCPDPSCRAAVGQDMINLLASDEDNEKYSRYLLRSYIEDNRKTKWCPAPGCEYAVEFVAGSGSYDVACQCSYGFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQNVNIEKLSDKQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHELPRRQFFEYLQGEAESGLERLHQCAEKELQTYLNVDGPSADFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSYGACSRTTSSKSMGGTNDSSRWYCEHCATANAKSAYTCQMCHQRRA* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22024943 22037763 + Vvi5g1195 Vvi5g1195 787337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1195 516 Pfam IBR domain, a half RING-finger domain 155 217 IPR002867 -
Vvi5g1195 516 Pfam IBR domain, a half RING-finger domain 234 282 IPR002867 -
Vvi5g1195 516 ProSiteProfiles Zinc finger RING-type profile. 86 130 IPR001841 -
Vvi5g1195 516 SUPERFAMILY RING/U-box 81 167 - -
Vvi5g1195 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 4 480 IPR031127 GO:0004842|GO:0016567
Vvi5g1195 516 SMART ibrneu5 155 217 IPR002867 -
Vvi5g1195 516 SMART ibrneu5 221 291 IPR002867 -
Vvi5g1195 516 ProSitePatterns Zinc finger RanBP2-type signature. 492 511 IPR001876 -
Vvi5g1195 516 CDD RING-HC_RBR_TRIAD1_like 86 136 - -
Vvi5g1195 516 Pfam Ariadne domain 304 467 IPR045840 -
Vvi5g1195 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 169 IPR013083 -
Vvi5g1195 516 ProSiteProfiles TRIAD supradomain profile. 82 295 IPR044066 -
Vvi5g1195 516 Gene3D - 213 468 - -
Vvi5g1195 516 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 4 480 - -
Vvi5g1195 516 SUPERFAMILY RING/U-box 155 224 - -
Vvi5g1195 516 SUPERFAMILY RING/U-box 236 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1195 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - vvi:100262873 1074.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi3g544 ECH 165 590 ARIADNE family AT4G34370 71.4 3.3e-180 628.2
Vvi18g871 ECH 169 534 ARIADNE family AT4G34370 67.0 1.0e-149 526.9
Vvi3g544 ECH 59 528 ARIADNE family AT2G16090 76.9 1.8e-219 758.8
Vvi18g871 ECH 63 523 ARIADNE family AT2G16090 68.3 8.5e-193 670.2
Vvi3g544 ECH 26 520 ARIADNE family AT3G27710 61.8 3.3e-182 635.2
Vvi18g871 ECH 41 523 ARIADNE family AT3G27710 59.5 3.5e-171 598.6
Vvi3g544 ECH 45 520 ARIADNE family AT3G27720 53.8 3.4e-141 498.8
Vvi5g1195 . 1 486 ARIADNE family AT1G05890 72.8 1.3e-224 776.2
Vvi5g1195 . 1 515 ARIADNE family AT1G65430 74.9 8.2e-248 853.2
Vvi5g1195 . 2 400 ARIADNE family AT2G31780 58.6 1.9e-146 516.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72