Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g1195 | ATGTTGCATCGCCATCAGCCTAATTATACCATCTTAAAGGAAGAAGATATACATCAGCATCAGGAAGATGATATTGCAAGAGTAGCTGCTGTTCTTTCAATAGCAAGTGTTTCAGCGAGCATCCTGCTCCGCCACTACCATTGGAGTGTTAGTAAAGTCAATGATGAATGGTTTGCTGATGAAAGTAGAGTCCGGAAAGCTGTTGGCTTATTGGAAGAACCACTTGTTCGATATCCCAATGCTAAAGAACTGACTTGTGGGATCTGTTTTGAAACCTATCCTCGTGATATGATACAATCAGCTGCTTGTGGTCATCCATTTTGTAGCACATGCTGGGAAGGTTATATTAGCACATCAATCAATGATGGTCCTGGTTGTTTGATGTTAAGATGCCCTGATCCATCTTGCCGAGCTGCTGTGGGCCAAGACATGATCAATCTCTTGGCATCTGATGAAGACAACGAGAAGTATTCTCGTTACCTTCTTAGATCATATATCGAAGACAATAGGAAGACCAAATGGTGTCCTGCCCCAGGTTGTGAGTATGCTGTGGAGTTCGTTGCTGGTAGTGGGAGCTATGATGTAGCCTGCCAGTGCTCATACGGATTTTGTTGGAATTGTACAGAGGAAGCTCATCGTCCAGTGGACTGTAGCACTGTGGCCAAGTGGATTTTGAAGAACAGCGCTGAATCTGAAAACATGAATTGGATACTAGCTAATTCGAAGCCTTGTCCGAAGTGTAAGCGTCCAATTGAAAAAAACCAAGGGTGTATGCATATTACATGCACACCACCCTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAGAGGACGGGTGGCTTTTACGCATGTAATCGATATGAAGCAGCAAAGCAAGAGGGAGTGTATGATGAAACTGAGAGAAGACGGGAGATGGCGAAAAATTCTTTAGAACGATACACTCATTATTATGAACGGTGGGCGACCAACCAATCGTCAAGGCAAAAAGCTCTTGCAGATTTACATCAAATGCAAAACGTGAATATTGAGAAGCTCAGTGACAAACAGTGCCAACCTGAATCACAGCTCAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAATGCAGACGGGTGCTGAAATGGACATATGCATATGGTTACTACTTACCCGAGCATGAGCTTCCCAGGAGACAATTTTTTGAGTACTTGCAAGGTGAGGCGGAGTCGGGTTTGGAAAGGCTTCATCAATGTGCAGAGAAGGAATTACAAACATACCTCAATGTTGATGGTCCATCAGCAGATTTCAATGACTTCCGCACAAAGCTAGCTGGACTGACAAGTGTAACACGGAATTACTTCGAGAACCTGGTCAGAGCATTGGAGAATGGGCTGTCAGATGTAGACTCTTATGGGGCTTGTAGCAGGACGACAAGTTCAAAGAGCATGGGAGGCACCAACGATTCAAGTCGATGGTATTGTGAACACTGTGCTACTGCTAATGCCAAGTCTGCCTACACATGCCAGATGTGCCACCAGCGACGGGCCTAA | 1551 | 44.75 | MLHRHQPNYTILKEEDIHQHQEDDIARVAAVLSIASVSASILLRHYHWSVSKVNDEWFADESRVRKAVGLLEEPLVRYPNAKELTCGICFETYPRDMIQSAACGHPFCSTCWEGYISTSINDGPGCLMLRCPDPSCRAAVGQDMINLLASDEDNEKYSRYLLRSYIEDNRKTKWCPAPGCEYAVEFVAGSGSYDVACQCSYGFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQNVNIEKLSDKQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHELPRRQFFEYLQGEAESGLERLHQCAEKELQTYLNVDGPSADFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSYGACSRTTSSKSMGGTNDSSRWYCEHCATANAKSAYTCQMCHQRRA* | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 22024943 | 22037763 | + | Vvi5g1195 | Vvi5g1195 | 787337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g1195 | 516 | Pfam | IBR domain, a half RING-finger domain | 155 | 217 | IPR002867 | - | |
Vvi5g1195 | 516 | Pfam | IBR domain, a half RING-finger domain | 234 | 282 | IPR002867 | - | |
Vvi5g1195 | 516 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 130 | IPR001841 | - | |
Vvi5g1195 | 516 | SUPERFAMILY | RING/U-box | 81 | 167 | - | - | |
Vvi5g1195 | 516 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 4 | 480 | IPR031127 | GO:0004842|GO:0016567 | |
Vvi5g1195 | 516 | SMART | ibrneu5 | 155 | 217 | IPR002867 | - | |
Vvi5g1195 | 516 | SMART | ibrneu5 | 221 | 291 | IPR002867 | - | |
Vvi5g1195 | 516 | ProSitePatterns | Zinc finger RanBP2-type signature. | 492 | 511 | IPR001876 | - | |
Vvi5g1195 | 516 | CDD | RING-HC_RBR_TRIAD1_like | 86 | 136 | - | - | |
Vvi5g1195 | 516 | Pfam | Ariadne domain | 304 | 467 | IPR045840 | - | |
Vvi5g1195 | 516 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 169 | IPR013083 | - | |
Vvi5g1195 | 516 | ProSiteProfiles | TRIAD supradomain profile. | 82 | 295 | IPR044066 | - | |
Vvi5g1195 | 516 | Gene3D | - | 213 | 468 | - | - | |
Vvi5g1195 | 516 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 4 | 480 | - | - | |
Vvi5g1195 | 516 | SUPERFAMILY | RING/U-box | 155 | 224 | - | - | |
Vvi5g1195 | 516 | SUPERFAMILY | RING/U-box | 236 | 284 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g1195 | K11968 | - | vvi:100262873 | 1074.69 |