Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1195 ATGTTGCATCGCCATCAGCCTAATTATACCATCTTAAAGGAAGAAGATATACATCAGCATCAGGAAGATGATATTGCAAGAGTAGCTGCTGTTCTTTCAATAGCAAGTGTTTCAGCGAGCATCCTGCTCCGCCACTACCATTGGAGTGTTAGTAAAGTCAATGATGAATGGTTTGCTGATGAAAGTAGAGTCCGGAAAGCTGTTGGCTTATTGGAAGAACCACTTGTTCGATATCCCAATGCTAAAGAACTGACTTGTGGGATCTGTTTTGAAACCTATCCTCGTGATATGATACAATCAGCTGCTTGTGGTCATCCATTTTGTAGCACATGCTGGGAAGGTTATATTAGCACATCAATCAATGATGGTCCTGGTTGTTTGATGTTAAGATGCCCTGATCCATCTTGCCGAGCTGCTGTGGGCCAAGACATGATCAATCTCTTGGCATCTGATGAAGACAACGAGAAGTATTCTCGTTACCTTCTTAGATCATATATCGAAGACAATAGGAAGACCAAATGGTGTCCTGCCCCAGGTTGTGAGTATGCTGTGGAGTTCGTTGCTGGTAGTGGGAGCTATGATGTAGCCTGCCAGTGCTCATACGGATTTTGTTGGAATTGTACAGAGGAAGCTCATCGTCCAGTGGACTGTAGCACTGTGGCCAAGTGGATTTTGAAGAACAGCGCTGAATCTGAAAACATGAATTGGATACTAGCTAATTCGAAGCCTTGTCCGAAGTGTAAGCGTCCAATTGAAAAAAACCAAGGGTGTATGCATATTACATGCACACCACCCTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAGAGGACGGGTGGCTTTTACGCATGTAATCGATATGAAGCAGCAAAGCAAGAGGGAGTGTATGATGAAACTGAGAGAAGACGGGAGATGGCGAAAAATTCTTTAGAACGATACACTCATTATTATGAACGGTGGGCGACCAACCAATCGTCAAGGCAAAAAGCTCTTGCAGATTTACATCAAATGCAAAACGTGAATATTGAGAAGCTCAGTGACAAACAGTGCCAACCTGAATCACAGCTCAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAATGCAGACGGGTGCTGAAATGGACATATGCATATGGTTACTACTTACCCGAGCATGAGCTTCCCAGGAGACAATTTTTTGAGTACTTGCAAGGTGAGGCGGAGTCGGGTTTGGAAAGGCTTCATCAATGTGCAGAGAAGGAATTACAAACATACCTCAATGTTGATGGTCCATCAGCAGATTTCAATGACTTCCGCACAAAGCTAGCTGGACTGACAAGTGTAACACGGAATTACTTCGAGAACCTGGTCAGAGCATTGGAGAATGGGCTGTCAGATGTAGACTCTTATGGGGCTTGTAGCAGGACGACAAGTTCAAAGAGCATGGGAGGCACCAACGATTCAAGTCGATGGTATTGTGAACACTGTGCTACTGCTAATGCCAAGTCTGCCTACACATGCCAGATGTGCCACCAGCGACGGGCCTAA 1551 44.75 MLHRHQPNYTILKEEDIHQHQEDDIARVAAVLSIASVSASILLRHYHWSVSKVNDEWFADESRVRKAVGLLEEPLVRYPNAKELTCGICFETYPRDMIQSAACGHPFCSTCWEGYISTSINDGPGCLMLRCPDPSCRAAVGQDMINLLASDEDNEKYSRYLLRSYIEDNRKTKWCPAPGCEYAVEFVAGSGSYDVACQCSYGFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQNVNIEKLSDKQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHELPRRQFFEYLQGEAESGLERLHQCAEKELQTYLNVDGPSADFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSYGACSRTTSSKSMGGTNDSSRWYCEHCATANAKSAYTCQMCHQRRA* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22024943 22037763 + Vvi5g1195 Vvi5g1195 787337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1195 516 Pfam IBR domain, a half RING-finger domain 155 217 IPR002867 -
Vvi5g1195 516 Pfam IBR domain, a half RING-finger domain 234 282 IPR002867 -
Vvi5g1195 516 ProSiteProfiles Zinc finger RING-type profile. 86 130 IPR001841 -
Vvi5g1195 516 SUPERFAMILY RING/U-box 81 167 - -
Vvi5g1195 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 4 480 IPR031127 GO:0004842|GO:0016567
Vvi5g1195 516 SMART ibrneu5 155 217 IPR002867 -
Vvi5g1195 516 SMART ibrneu5 221 291 IPR002867 -
Vvi5g1195 516 ProSitePatterns Zinc finger RanBP2-type signature. 492 511 IPR001876 -
Vvi5g1195 516 CDD RING-HC_RBR_TRIAD1_like 86 136 - -
Vvi5g1195 516 Pfam Ariadne domain 304 467 IPR045840 -
Vvi5g1195 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 169 IPR013083 -
Vvi5g1195 516 ProSiteProfiles TRIAD supradomain profile. 82 295 IPR044066 -
Vvi5g1195 516 Gene3D - 213 468 - -
Vvi5g1195 516 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 4 480 - -
Vvi5g1195 516 SUPERFAMILY RING/U-box 155 224 - -
Vvi5g1195 516 SUPERFAMILY RING/U-box 236 284 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1195 K11968 - vvi:100262873 1074.69