Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1198 ATGCGTGCACCATCACTGCTGGCACAGTGCTTGCCTGGCTTGGTGGCCCATGACAAGGGAAGCCACAGCATGTCCTCCATCTCTGAGAGAGATGTGCATCTTTGTTCTCCAGCTGTCGAGATTCTCCCTTCAAAGATGGCTCACCCATATAAGTATGCCGGAGAGAATGTAGACTTGCAAGGGCTACATGTTTTCAAGGGGAGAGTCAGTGTTGCTGACATTATTGGGTTCAATGGTTCAGAAATGATATCCTCCAAACCTGAAGGATCACTGAAATCTTGGGACAGCTCTATTGATCTTGTTAATGTTCTTAAGCATGAGATTCGTGATGGACAATTGAGCTTTAGAGGCAAAAGGGTACTTGAGCTTGGTTGCACCTATGGACTTCCTGGAATTTTTGCTTGCCTAAAGGGAGCTTCTACAGTGCACTTTCAAGACCTGAATGCAGAAGCAATTAGATGCACAACTATTCCAAATGTCCTGGCAAATCTGGAGCAGGCTCGGGACAAGCAAAGCCGACAGCCAGAGAGTCCCCTGACTCCATCAAGGCAAACTCTGGCCCCAGTGGTGCATTTTTATGCTGGAGACTGGGAAGAACTCCCCACAGTTTTATCCATTGTGAGGACTGAAGGGTCGGAAGTGCCAACTGGGATGAACCTGAGCTTCTCTGAGGAGGATTTCATGGATGGGTGCAGCAGCCATGATGGTAGCCTTACAGGACATGAATTTTCCTCAAGGCGATCAAGGAAGCTCTCTGGAAGCAGAGCATGGGAGAGGGCTAGTGAGATGGATTCTGGTGAAGGTGGCTATGATGTTATTCTGATGACTGAGATCCCATACTCGGTGACCTCACTGAAGAAGTTGTATGCACTGATAAAAAAGTGTTTGAGGCCTCCTTATGGAGTAATATACTTGGCCACAAAGAAGAACTACGTCGGCTTCAACAATGGAGCACGAGTTTTGAGAAATCTGGTAGATGAGGAAGGTTTTTTTGGAGTACATTTAGTTAAAGAGATGTCTGATAGAGATGTATGGAAGTTCTTTCTCAAGTGA 1053 46.44 MRAPSLLAQCLPGLVAHDKGSHSMSSISERDVHLCSPAVEILPSKMAHPYKYAGENVDLQGLHVFKGRVSVADIIGFNGSEMISSKPEGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCTYGLPGIFACLKGASTVHFQDLNAEAIRCTTIPNVLANLEQARDKQSRQPESPLTPSRQTLAPVVHFYAGDWEELPTVLSIVRTEGSEVPTGMNLSFSEEDFMDGCSSHDGSLTGHEFSSRRSRKLSGSRAWERASEMDSGEGGYDVILMTEIPYSVTSLKKLYALIKKCLRPPYGVIYLATKKNYVGFNNGARVLRNLVDEEGFFGVHLVKEMSDRDVWKFFLK* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22071838 22077330 + Vvi5g1198 Vvi5g1198 787340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1198 350 Gene3D Vaccinia Virus protein VP39 77 347 IPR029063 -
Vvi5g1198 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 331 IPR029063 -
Vvi5g1198 350 PANTHER OS09G0514300 PROTEIN 1 346 - -
Vvi5g1198 350 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 1 346 IPR019410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1198 - - - vvi:100257747 704.901
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1198 . . . . . . . . . . Cma06g01651 Cma14g01468 Car06g01402 Car14g01304 Sed12g0631 Cpe08g00080 Cpe03g01237 Bhi01g02695 Tan10g1290 Cmetu07g1206 . Hepe05g1226 . Lcy11g1139 . . . . . . . . . . Cone11ag0615 . . . Cme07g01895 . . Bda11g00459 . . Bpe13g00737 . Bma06g01395 . Cmo06g01654 Cmo14g01507 . . . . . . . . . . . . . Cla07g01484 Cam07g1580 Cec07g1680 Cco07g1640 Clacu07g1571 Cmu07g1539 Cre07g1916 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005791 1 3 0 1 1 1 2 1 1 1 1 1 4 1 1 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 39