Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1200 ATGGAGTGGAAGGAGGAAGGCGAGGAACGTCCTCTCAGCCAGCGGCCGGAATGGTCGGACGTCACTCCGGTCCCGCAAGACGACGGTCCGAATCCGGTAGTCCCCATCGCCTACAAGGACGACTTCACTGAAACCATGGACTACTTCCGAGCCGTCTACTTTGCTGACGAACGATCTCTCCGTTCTCTTCACGTTACCGCCGAAGCCATCCACATGAACGCCGGCAATTACACGGTATGGCATTTTAGGCGTCTAATACTTGGGGCACTTAATGCTGACTTGCATGAGGAACTGAATTTCATCAAAAAGGTGGCCAATGGTAACCCCAAAAACTACCAGATATGGCATCATCGGCGCTGGGTTGCTGAGAAATTGGGAAGTGATGCTACGAGTAAGGAACTTGACTTCACTAAGAAGATACTCTCCCTTGATGCTAAAAATTACCATGCATGGTCCCATAGGCAGTGGGTTCTTCAGGAACTAGGAGGATGGGAAGATGAACTTGACTATTGTAAGCAGCTCCTTGAGGATGACATTTTTAACAATTCTGCTTGGAATCAGAGATATTTTGTTATAACAAAATCTCCCTTCCTGGGAGGCCTGGAAGCCATGAGAGAGTCTGAAGTGAATTACACTGTTGGCGCCATTATAGCCAAACCTGAAAATGAAAGCCCATGGAGATACCTCCGAGGCCTTTATAAAGACGACGCCCAATCTTGGGTAAATGATCCTCAAGTCTCATCTGTGTGTTTGACGGTTTTGAGTGCCAAACGAAACACAGTGTTTGCCCTGAGCACACTGTTGGATCTTCTGTGTCATGGTTTCCAACCAAGCCAAGACTTCATCAATGCCGTGGACGCACTGAAGACCCCAGACTTGGATCAGTCTGATTCCAACTTGGCAACAGCGGTCTGTTCAGTCTTGGGACACATGGATCCAATGAGGGTAAACTATTGGGCATGGCGCAAGAACAAGCTCCCTGCTCAAACAGCTTAG 996 48.59 MEWKEEGEERPLSQRPEWSDVTPVPQDDGPNPVVPIAYKDDFTETMDYFRAVYFADERSLRSLHVTAEAIHMNAGNYTVWHFRRLILGALNADLHEELNFIKKVANGNPKNYQIWHHRRWVAEKLGSDATSKELDFTKKILSLDAKNYHAWSHRQWVLQELGGWEDELDYCKQLLEDDIFNNSAWNQRYFVITKSPFLGGLEAMRESEVNYTVGAIIAKPENESPWRYLRGLYKDDAQSWVNDPQVSSVCLTVLSAKRNTVFALSTLLDLLCHGFQPSQDFINAVDALKTPDLDQSDSNLATAVCSVLGHMDPMRVNYWAWRKNKLPAQTA* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22089859 22095722 + Vvi5g1200 Vvi5g1200 787342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1200 331 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 58 92 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 SUPERFAMILY Protein prenylyltransferase 15 326 - -
Vvi5g1200 331 Pfam Protein prenyltransferase alpha subunit repeat 132 160 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 Pfam Protein prenyltransferase alpha subunit repeat 164 193 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 Pfam Protein prenyltransferase alpha subunit repeat 63 88 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 Pfam Protein prenyltransferase alpha subunit repeat 94 124 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 Gene3D Protein prenylyltransferase 4 331 - -
Vvi5g1200 331 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 204 238 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g1200 331 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 129 163 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 93 127 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 14 329 - -
Vvi5g1200 331 MobiDBLite consensus disorder prediction 1 32 - -
Vvi5g1200 331 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 164 197 IPR002088 GO:0008318|GO:0018342
Vvi5g1200 331 PANTHER PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHA 14 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1200 K05955 FNTA; protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [EC:2.5.1.58 2.5.1.59] - vvi:100247502 694.886
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1200 . . . . . . . . . . . Cma14g01470 . . Sed05g1558 . . Bhi01g02690 Tan10g1287 Cmetu04g0591 . Hepe05g1229 . Lcy11g1142 . . . . . . . . . . . . . . . . Blo07g00087 Bda11g00457 . . Bpe13g00739 . . . . Cmo14g01509 . . . . . . . . . . . . . Cla07g01486 Cam07g1582 Cec07g1682 Cco07g1643 Clacu07g1573 Cmu07g1541 Cre07g1918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008182 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1 1 35