Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1201 ATGTCTCACATTCTCCTCAAAAGTTGCACCCTTGCATTGGCTTCTGTCCGCATTACCTGGCCCATGTCCAGAGCAACCTCTTCTTCCAAACCCCTTCTTCCAGCCCTTCAATCCAAAACTTCAGCTCATGAAGAAACCCCCAATGGCGTTTCTGGGTCCGAGGTTCGTGTTTTTGTTAGGAAAAAGAGAGTGAAAATGGCTGTTGAAACCCCAGAAAAGGAGATTAAAGCTGAACCTCAACAGCAGAAAATCTGTGAACTACCTGACATTGAAGAGTTCACTTACAGAAAGGGCAAAAGATCTACCCATTTAAGGAAGTCAAAACCCACCTCTGACGTGCCTCCAGGAGGAACTGAAATTACTTCTTCCATTAGGCCAGCAGCTGAACTACCTGCCAATTGGGAAAAGATCCTTGAAGGGATTCGTAAAATGAGGTCTTCTGAAGATGCACCAGTAGATTCAATGGGTTGTGAGAAAGCTGGCAGCTCTCTTCCTCCAAGGGAAAGAAGATTTGCTGTCTTGGTGTCTTCACTTCTATCAAGCCAAACCAAGGATAATGTTACTCATGGCAATGCAGGAGCAATACAGCGGCTCCTTCAAAATGGTCTGCTTGTTGCTGATGCCATTGACAAGGCTGATGAAGCAACTGTCAAGAGCTTGATTTACCCGGTTGGATTTTACTCGAGGAAAGCTGGTAACCTTAAAAAAATTGCAAAAATCTGTCTCATGAAATATGATGGAGATATACCAAGTTCATTGGAAGAGTTGCTCTTACTTCCAGGGATAGGTCCAAAGATGGCTCATTTGGTCATGAACGTGGCTTGGAACAATGTCCAAGGGATTTGTGTTGATACTCATGTGCACCGCATTTGTAATAGGCTTGGATGGGTGTCACGGCGAGGAACAAAGCAGAAAACTTCATTGCCTGAGGAAACAAGAGAGTCGTTGCAACTGTGGCTTCCAAAAGAAGAATGGGTTCCAATTAATCCTCTTTTGGTGGGATTTGGACAGACAATATGCACTCCTCTCAGACCTCGCTGTGGAGTGTGTGGTGTAAGCGATCTCTGCCCATCTGCATTCAAGGAGGCACAGAGCCCATCATCCAAGATGAAGAAGCCTGGTACAGACAAGAAACTTTGA 1140 45.09 MSHILLKSCTLALASVRITWPMSRATSSSKPLLPALQSKTSAHEETPNGVSGSEVRVFVRKKRVKMAVETPEKEIKAEPQQQKICELPDIEEFTYRKGKRSTHLRKSKPTSDVPPGGTEITSSIRPAAELPANWEKILEGIRKMRSSEDAPVDSMGCEKAGSSLPPRERRFAVLVSSLLSSQTKDNVTHGNAGAIQRLLQNGLLVADAIDKADEATVKSLIYPVGFYSRKAGNLKKIAKICLMKYDGDIPSSLEELLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNRLGWVSRRGTKQKTSLPEETRESLQLWLPKEEWVPINPLLVGFGQTICTPLRPRCGVCGVSDLCPSAFKEAQSPSSKMKKPGTDKKL* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22095734 22103188 - Vvi5g1201 Vvi5g1201 787343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1201 379 Gene3D Hypothetical protein; domain 2 167 278 - -
Vvi5g1201 379 Hamap Endonuclease III-like protein 1 [NTHL1]. 130 362 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Vvi5g1201 379 Pfam HhH-GPD superfamily base excision DNA repair protein 175 306 IPR003265 GO:0006284
Vvi5g1201 379 ProSitePatterns Endonuclease III family signature. 247 276 IPR004036 -
Vvi5g1201 379 CDD ENDO3c 171 336 IPR003265 GO:0006284
Vvi5g1201 379 MobiDBLite consensus disorder prediction 24 48 - -
Vvi5g1201 379 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 340 356 IPR004035 -
Vvi5g1201 379 SMART ccc3 339 359 IPR003651 GO:0051539
Vvi5g1201 379 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 56 379 - -
Vvi5g1201 379 Gene3D - 279 356 IPR023170 -
Vvi5g1201 379 MobiDBLite consensus disorder prediction 97 122 - -
Vvi5g1201 379 MobiDBLite consensus disorder prediction 24 51 - -
Vvi5g1201 379 Pfam Iron-sulfur binding domain of endonuclease III 340 356 IPR003651 GO:0051539
Vvi5g1201 379 SUPERFAMILY DNA-glycosylase 143 365 IPR011257 GO:0003824|GO:0006281
Vvi5g1201 379 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 56 379 - -
Vvi5g1201 379 SMART endo3end 179 338 IPR003265 GO:0006284
Vvi5g1201 379 Pfam Helix-hairpin-helix motif 244 272 IPR000445 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1201 K10773 NTH; endonuclease III [EC:4.2.99.18] - vvi:100268015 736.487
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32