Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1203 ATGTATTCAAAACGGTCTGGTCAAGGGGATGGATCTGCTTCAGGACCAGTACGCACAAGTGATAGGCTCAGGAGAAGGCCAAAGATGTATGGTCGCTCATACTTGTATTATAGTCCAACCATTATACGCGGCAAGAAAAGCAAAACTAAGACAAGAACAGCAGCTTCTCAGATTGCCAAGATGTTGCGTCCTGGGAATCGGCCAATGCGGAACTCAAATAGTAATTCAGTTGCGACCAACCTTCGACGTTCTACCAGAAAGAGGAGGATTTCTGTAAATCTTGAAGGTTATACAGATAGTTCTGGGTCAGAGGAAGATGATGACTTGATGAGACCCAAGTATCGACCTTCTAGAAACCGCATTGACAATAGTGCAAGTCAAGATGAGTTATCATCTCCTAAACATAAAAAAATCCTTGATGCTAGACCATTGCCGAGGCGTGAAGGACTTCGTCCCCGTCGCTCAAAAGCAGTTGCAAGAGAACAGTTGAATCTAGAATCTGATGATGAACAAGGTACATCTGAAGAGAAGGAGGAAGGAAGGAGGCGGTATGATCTTCGTAATCGTGCTGATGTCCGCAGGCTTTCTCTTGAAGAAGGTAAGCAAAGACCAAGATCTCCTCGAAGAGTGTTACATCAAGGGATGGGTACTAAGGTCAGCAGAGATGCAAGGAAGGGTGGATCTCGAGGTCACAAGCGTCATCGCCTAGCAAGAGCCGAAGATTCTGATGACTCTCTTCTTGTGGATGAGCTAGATCAAGGTCCTGCTATTCCTTGGGGGCGTGGTGGGAGCAGATCTGCACCACCTTGGCTTTTTGGCGGACTAGATGTGCCTGGGACATCAGCGTGGGGCTTGAATGTTGCTGCTTCTGGTTGGGGACATCAGAGTGATGCTTTTGCTACCTTGACTTCTGGGATCCAAACAGCTGGACCAAGCTCCAAGGGAGGGGCTGATATTCAACCTTTACAGGTTGATGAGAGTGTAAGTTTTGATGACATAGGTGGGCTTTCTGAATATATTGATGCATTGAAAGAAATGGTTTTCTTCCCCTTGCTATATCCAGATTTCTTTGCTAGTTACCACATCACCCCTCCCAGGGGGGTCTTGTTATGTGGTCCCCCTGGCACTGGGAAAACACTTATTGCAAGAGCATTGGCTTGTGCTGCTTCAAAGGCTGGCCAGAAAGTCAGTTTTTACATGCGGAAGGGTGCTGATGTGCTTAGCAAATGGGTAGGTGAGGCTGAAAGACAATTGAAACTACTTTTTGAAGAAGCTCAAAGGAATCAACCATCTATTATCTTCTTTGATGAAATTGATGGACTTGCCCCTGTTCGCTCTAGCAAACAAGAGCAAATTCACAATTCTATCGTGTCAACTTTGCTTGCATTAATGGATGGTCTTGATTCTCGTGGACAAGTCCTTGCTGCCAGTTGTGTAGGATATTGTGGTGCTGATTTAAAAGCTCTTTGCACTGAAGCTGCAATTCGTGCTTTTCGTGAAAAATATCCTCAGGTTTACACTAGTGATGACAAATTTGTGATAGATGTTGATTCAGTAAAGGTCGAAAAGTATCATTTTGTAGAAGCCATGTCAACAATTACCCCTGCTGCACACAGGGGCTCTATTGTTCACTCTCGACCATTGTCGTTAGTTGTTGCACCATGTCTACAAAGGCATCTCCAGAAGGCTATGAATTATATATCAGATATTTTTCCTGCTCTTGCAATTTCCTCAGAATTAACGAAGCTTTCTATGCTGTCCTATGGTTCTGCAATTCCTCTTGTGTATAGACCTCGGTTTTTGTTATATGGCAGTGAAGATGTGGGGCTGGATCATCTTGGGCCAGCTATTTTACATGAGCTGGAGAAATTTCCTGTTCATTCTCTAGGATTTCCAGCTCTTCTTTCAGATCCTAGTGCAAAGACACCAGAAGAGGCATTGGTACATATATTTGGTGAAGCAAGAAGAACAACACCATCCATACTGTATTTACCTCAATTCCATCTTTGGTGGGAGAATGCACATGAGCAGCTTAAGGCTGTTCTGAGAACCCTATTGGAAGAATTGCCTTCTGACTTTCCCATATTATTACTAGGAACATCCTCAACACCCCCATCTGAATTGGAGACTATGGGTGCAACTTCAGTCTTTTCTCACCGTAATATCTATGAAGTGGGAAAACCATCAATTGAAGACAGAAATCTGTTTTTTGAGCGTTTGGTTGAAGCTGCTTTGTCAGTGTCATCAGAGGGATCAAAGGGAAAATCCCAAGAACAGGCCCTTCCTGAACTCCCCAAAGCACCAAAAGTAGCAAGTGGCCCAAAAGTCTCCGAGTTAAAAGCCAAGGTAGAAGCTGAACAACATGCACTGCGGCGACTGCGAATGTGTCTTAGAGATGTTTGCAACCGGATTTTGTATGATAAAAGGTTCACTGTCTTCCATTATCCGGTCATGGATGAGGATGCACCAAACTATCGCTCAATCATTCAGAATCCCATGGACATGGCTACTCTTCTGCAGCGTGTGGACTGTGGGCAGTATATTACATGTTCAGTATTCCTGCAAGATATTGATCTTATTGTTAACAATGCGAAGGCTTATAATGGAGACGATTACAATGGAGCTAGGATCGTCAGTAGAGCCTACGAGCTTCGAGATGCAGTTTATGGAATGCTGTCACAGATGGACCCTGCACTGGTTGCATTCTGTGAAAAGATTGCTGCCCAAGGGGGTCCAGCCCATATGCCAGACGAGCTTGGGGGCTCAGTTTTCACACCCACTCCTGTTGTTCAGATGGCAACTGTTACTAGAGCAAGTGCTCGACTTCGTAATGTGCAGCCAGAGGTTAATCTGGACCAAAGCTATGAAGCATTGAAAAGACCAAAAAAGAATGTTGATGCTGCACCTTCAGTGTCAACAGCAGAAGACAAGCCACGGCAACAGGAAGCTGCGCCATCAAAGTCATCACAAGAAAATGAGGCAAATGAGGCAAATGACGCAAGTCCTGAACAGCCAGAGTGCTCTCTTGCTGATAACCATAGACCTGAAACCTCTCAAGAAGCATCAGGTCATACCAGTGCAAGTGGATCCCAAGAAGATGTTATAATGTCAGATGTAGAGATTTTGAGCCAAATGGAATCGGTTAAGCTGCTTTTTGTGGAGCGCACTGAAAACTATGGTATTCCACAGCTGGAAAGGCTTTACACGCGCATTATGAAGGGTGTGTTCGAAGCCAAAGATGGTGGGGTTGGGGAAGATCCAAAGCCTTCAATTTTGAAGTTTTTGTTGAAGTTTGCCAATGATGAGGCAAACTTCTGA 3318 44.67 MYSKRSGQGDGSASGPVRTSDRLRRRPKMYGRSYLYYSPTIIRGKKSKTKTRTAASQIAKMLRPGNRPMRNSNSNSVATNLRRSTRKRRISVNLEGYTDSSGSEEDDDLMRPKYRPSRNRIDNSASQDELSSPKHKKILDARPLPRREGLRPRRSKAVAREQLNLESDDEQGTSEEKEEGRRRYDLRNRADVRRLSLEEGKQRPRSPRRVLHQGMGTKVSRDARKGGSRGHKRHRLARAEDSDDSLLVDELDQGPAIPWGRGGSRSAPPWLFGGLDVPGTSAWGLNVAASGWGHQSDAFATLTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVLAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVDSVKVEKYHFVEAMSTITPAAHRGSIVHSRPLSLVVAPCLQRHLQKAMNYISDIFPALAISSELTKLSMLSYGSAIPLVYRPRFLLYGSEDVGLDHLGPAILHELEKFPVHSLGFPALLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHLWWENAHEQLKAVLRTLLEELPSDFPILLLGTSSTPPSELETMGATSVFSHRNIYEVGKPSIEDRNLFFERLVEAALSVSSEGSKGKSQEQALPELPKAPKVASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVMDEDAPNYRSIIQNPMDMATLLQRVDCGQYITCSVFLQDIDLIVNNAKAYNGDDYNGARIVSRAYELRDAVYGMLSQMDPALVAFCEKIAAQGGPAHMPDELGGSVFTPTPVVQMATVTRASARLRNVQPEVNLDQSYEALKRPKKNVDAAPSVSTAEDKPRQQEAAPSKSSQENEANEANDASPEQPECSLADNHRPETSQEASGHTSASGSQEDVIMSDVEILSQMESVKLLFVERTENYGIPQLERLYTRIMKGVFEAKDGGVGEDPKPSILKFLLKFANDEANF* 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22132087 22144271 - Vvi5g1203 Vvi5g1203 787345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1203 1105 PANTHER AAA DOMAIN-CONTAINING 1 178 IPR045199 -
Vvi5g1203 1105 PANTHER AAA DOMAIN-CONTAINING 474 1103 IPR045199 -
Vvi5g1203 1105 PANTHER AAA DOMAIN-CONTAINING 168 474 IPR045199 -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 174 206 - -
Vvi5g1203 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 534 IPR027417 -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 104 118 - -
Vvi5g1203 1105 PANTHER BNAC08G44480D PROTEIN 168 474 - -
Vvi5g1203 1105 PANTHER BNAC08G44480D PROTEIN 474 1103 - -
Vvi5g1203 1105 PANTHER BNAC08G44480D PROTEIN 1 178 - -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 974 1002 - -
Vvi5g1203 1105 Pfam AAA+ lid domain 474 509 IPR041569 -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 953 1032 - -
Vvi5g1203 1105 Gene3D - 474 531 - -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 1 31 - -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 1011 1032 - -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 61 242 - -
Vvi5g1203 1105 CDD Bromo_AAA 790 900 - -
Vvi5g1203 1105 ProSiteProfiles Bromodomain profile. 813 875 IPR001487 GO:0005515
Vvi5g1203 1105 SMART bromo_6 790 897 IPR001487 GO:0005515
Vvi5g1203 1105 Gene3D - 782 910 IPR036427 GO:0005515
Vvi5g1203 1105 PRINTS Bromodomain signature 822 838 IPR001487 GO:0005515
Vvi5g1203 1105 PRINTS Bromodomain signature 838 856 IPR001487 GO:0005515
Vvi5g1203 1105 PRINTS Bromodomain signature 856 875 IPR001487 GO:0005515
Vvi5g1203 1105 Pfam Bromodomain 804 871 IPR001487 GO:0005515
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g1203 1105 SUPERFAMILY Bromodomain 788 900 IPR036427 GO:0005515
Vvi5g1203 1105 Pfam ATPase family associated with various cellular activities (AAA) 368 474 IPR003959 GO:0005524|GO:0016887
Vvi5g1203 1105 Gene3D - 326 473 IPR027417 -
Vvi5g1203 1105 SMART AAA_5 364 486 IPR003593 -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 67 81 - -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 129 167 - -
Vvi5g1203 1105 MobiDBLite consensus disorder prediction 752 775 - -
Vvi5g1203 1105 CDD AAA 364 477 - -
Vvi5g1203 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 809 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1203 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - vvi:100242365 1977.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33