Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1207 ATGTTTGTCACATGGGTATTTTCTCTATTAATTTCCACAACAACAACCCCTTTTGCTCTTTCTTCCACCACCTCCTCCACAACACCCTCAACCTCCCAAGCCATTTCCTATGATGTGCTCCAACAACACCTCTCCTCCAAGAATTATAGGCAAGCAGATGAAGAAACCAGGAGGCTGCTGATAGTGTTGGCAGGCGAGGCAGCAGTGAAGAGAGGGTATGTGTTCTTCTCTGAGGTGCAGTTCATACCAGAGGCTGATCTCAAGGCCATTGATGAGCTGTGGAGGCAGCACAGCAACAACAAGTTTGGGTACAGTGTGCAGAGGAGAATATGGGAGAAGGTGAACAAGGACTTCAGCAGGTTTTTCCTCAAGGTTGGGTGGATGAAGAAGCTTGATACAGAAGTTGAGCAGTACAACTACAGGGCCTTTCCCACTGAGTTCATGTGGGAGCTCACTGATGACACCCCTGAGGGTCACTTGCCATTGACAAATGCACTTAGGGGGACACAACTACTCAACTGCCTTCTCGGCCACCCAGCCTTTCAGGGAAATGAGGAGGAAGAAGAGGAAGTTGCAGAAGAGAAAGGTAGTGTTAATGGTGGGTTGGGGGTTTTAAGAGATGGGTCAAAGCCATTGAGCAAGAGTGTCTTCAAGCCAGACTACAGCTTTTAA 672 48.21 MFVTWVFSLLISTTTTPFALSSTTSSTTPSTSQAISYDVLQQHLSSKNYRQADEETRRLLIVLAGEAAVKRGYVFFSEVQFIPEADLKAIDELWRQHSNNKFGYSVQRRIWEKVNKDFSRFFLKVGWMKKLDTEVEQYNYRAFPTEFMWELTDDTPEGHLPLTNALRGTQLLNCLLGHPAFQGNEEEEEEVAEEKGSVNGGLGVLRDGSKPLSKSVFKPDYSF* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22200688 22202305 - Vvi5g1207 Vvi5g1207 787349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1207 223 Gene3D - 8 98 - -
Vvi5g1207 223 Pfam GUN4-like 32 178 IPR008629 -
Vvi5g1207 223 MobiDBLite consensus disorder prediction 188 223 - -
Vvi5g1207 223 Gene3D - 99 186 - -
Vvi5g1207 223 SUPERFAMILY GUN4-like 32 182 IPR037215 -
Vvi5g1207 223 PANTHER TETRAPYRROLE-BINDING PROTEIN, CHLOROPLASTIC 11 223 IPR008629 -
Vvi5g1207 223 CDD GUN4 35 177 IPR008629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1207 - - - vvi:100259476 395.971
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1207 Blo01g00200 Blo12g00259 Bda03g00978 Bda08g00150 Bpe04g00905 . . Bma05g01172 Cmo08g00208 Cmo17g00582 . . . . . . . . . . . . . . . . . . . . . Cone14ag0568 . . . . . . . . . . . Bpe05g00981 . . . . . . . Cma17g00602 . Car17g00569 Cpe12g00512 Cpe17g01094 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005926 2 1 2 3 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 2 1 2 1 1 39